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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MELO3C014232P1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
ARF |
Protein Properties |
Length: 655aa MW: 72143.5 Da PI: 6.6879 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MELO3C014232P1 | genome | MELONOMICS | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 74.5 | 1.3e-23 | 120 | 221 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + +
MELO3C014232P1 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAE 210
89****************************996555555..89***********************************************..448 PP
EE..EEEEE-S CS
B3 89 efelvvkvfrk 99
++ l+v+++r+
MELO3C014232P1 211 NGDLCVGIRRA 221
8999****997 PP
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2 | Auxin_resp | 113 | 2.8e-37 | 243 | 326 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
aa+ as++++Fe+v++Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+ +v+ +dp+rWp+S+Wr+L+
MELO3C014232P1 243 AAKLASNGQPFEIVFYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWfMGTINSVQVADPLRWPESPWRLLQ 326
7899******************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 655 aa
Download sequence Send
to blast |
MITFMDSKEK LKEVEKCLDP QLWHACAGGM VQMPPVNARV FYFPQGHAEH SCAPVDFRNC 60 PKVPSYTLCR VSAIKFLADP DTDEVFAKLR LIPINGSELD FEDDGIGRLN GSEQDKPTSF 120 AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQTI LAKDVHGETW KFRHIYRGTP 180 RRHLLTTGWS TFVNHKKLVA GDSIVFLRAE NGDLCVGIRR AKRGIGDGPE SSCGWNPAGV 240 IEAAKLASNG QPFEIVFYPR ASTPEFCVKA ALVKAALQIR WCSGMRFKMA FETEDSSRIS 300 WFMGTINSVQ VADPLRWPES PWRLLQVTWD EPDLLQNVKR VSPWLVELVS NMSPIHLAPF 360 SPPRKKFRYP QHPDFPLDNQ PPVPSFSSYL HGTGSPFGCP PDNNPAGMQG ARHAHFGLSL 420 SDFHLSKLQS GLFSIGYRSL DPAAGSTRLS GNIMTEKPSM SENVSCLLTM AHSTQASKKF 480 DGVKTPQLIL FGRPILTELQ MSQSFSGDTV SPVGTGNSSS DGNGDKMTNL SDGSGSALHQ 540 QGLPEGSACE NFQWYKDNRQ EIDPNLDTGH CKVFMESEDV GRTLDLSSLG SYEELYRKLG 600 NMFGIDNSET LNHVLYRDVS GAVKHVGDEQ FSDFIKTARR LTILTDSGSN NVGA*
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Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KC843343 | 0.0 | KC843343.1 Cucumis sativus auxin response factor 10b (ARF10b) mRNA, complete cds. |