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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C014217P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 373aa MW: 42716.2 Da PI: 10.0541 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.6 | 1.9e-10 | 250 | 297 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+++++G+g+W+ I +++ +Rt+ +++++w+++l MELO3C014217P1 250 WTLTEVMRLVDGIAEYGTGRWTHIKKHLFassPHRTPIDLRDKWRNLL 297 ****************************99****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-13 | 241 | 299 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.175 | 241 | 301 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.74E-16 | 244 | 313 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-9 | 246 | 299 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.47E-17 | 248 | 298 | No hit | No description |
Pfam | PF00249 | 3.1E-8 | 249 | 297 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MYSQSTDAEV AENSFRRNRR FQLGNSSSEN KSPGPSRIDT DAFGISELSA TMVMEAEFNN 60 TPVERGLTHE LSPGLGTKGR CVTPLEGNIC GTILDNRNIH KFNTNENYIE NGDLSDENVK 120 GDIVANELAS CSRERRLRKP TRRYIEEFLD SKSEHNKGRR KLPRKDKYLK VMSTEESYHI 180 RHEVQMMPRS DSQCGTSVPV QPKSERRHPN KHVPVSGFLS EDESSATECK NVYSSARRCK 240 KYDRRRQKMW TLTEVMRLVD GIAEYGTGRW THIKKHLFAS SPHRTPIDLR DKWRNLLRAS 300 CVNIQNKKGV EGKQTHASRP LPKSLLQRVY ELANIYPYPK ERGPKSVKAI TPPMDLIESN 360 SLSFNWGRKK YE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 139 | ERRLRKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681887 | 0.0 | LN681887.1 Cucumis melo genomic scaffold, anchoredscaffold01600. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008449228.1 | 0.0 | PREDICTED: uncharacterized protein LOC103491166 isoform X4 | ||||
Refseq | XP_008449229.1 | 0.0 | PREDICTED: uncharacterized protein LOC103491166 isoform X4 | ||||
TrEMBL | A0A1S3BMG8 | 0.0 | A0A1S3BMG8_CUCME; uncharacterized protein LOC103491166 isoform X4 | ||||
STRING | XP_008449224.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4716 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 5e-22 | TRF-like 6 |