PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C013947P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GRAS

Protein Properties

Length: 770aa MW: 84327.2 Da PI: 5.0506

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C013947P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	332.8	6.3e-102	407	768	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++L+++Ae v +g+++ aq +Larl+++ sp g+p+qR+a+yf+eAL+ l+ ++ ++ pp+ ++ +++ ++ a+k+fse+sP+++f ++ MELO3C013947P1 407 LDQLYKAAELVGTGNFSYAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLM--NNPVNPPPPRCPTPFDVIFKMGAYKVFSEISPLIQFVNF 499 679***********************************************98..6667788888888999******************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 t+Nqa+lea++ +r+Hi+Dfdi+ G+QW++++q+L+ R++g+psl+iT+++sp++++ el ++e+L++fA+ +g++fef+v+ ++++l+ MELO3C013947P1 500 TCNQALLEALDDVDRIHIVDFDIGFGAQWASFMQELSLRSRGAPSLKITAFASPSTHHPIELGLMRENLTQFANDIGISFEFEVV---NFDSLNQ 591 ********************************************************************************8...6666655 PP GRAS 192 eeL.....rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 +++ r +++Ea+aVn+ l + ++++ l+s +L+++k+lsPk+vv ++ +d+++ +F +++l+al+ y l++sl+a +s++ MELO3C013947P1 592 NSFplpftRSSENEAIAVNFPLWCSS--NQPAMLPS----LLRFIKQLSPKIVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAI-NMNSDA 679 555444445566*****95554..45777777....*****************************************887.7899 PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +k+Er+ll+++i++ v + ++ e++ W+ + +aGF+pv++s+++++qa+++ ++++++g++ve++++slvl+W++r+L+s+SaWr MELO3C013947P1 680 VNKIERFLLQPRIESTVLGRLRA----PERMPLWKTLFASAGFTPVTFSNFTETQAECVAKRTSVRGFQVEKRQASLVLCWQRRELISASAWR 768 ****************99998....999************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.138	380	748	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-99	407	768	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence Send to blast
MGKGELEFSA AFSSSSPICS GFAEKWVKKG EEQQEQELDE EQEEGFSYFA LPNNEPTSVL 60 HMRSPSPPTS ASTLSSSFGG GGGGGGGCVP SLPPETPAVE PVAGAGVGNA IFPGGLERCG 120 VGLEDLESMW SETAGPEPSF LRWFAGDVED PSLGSKSVLA NGNIPFDLDG NAGIGIVDQG 180 SEFDTGSGNV LANINPNLSF PLAACAGFSD VNGNNKSFNR NTCGGVVNYK SSSLGSNNRH 240 GNFNVQNPIF TGSLENLVVP VSGMIYPQQL QPFESPDEKP QNLNTQVLLN QHQQPQNPSF 300 FVPLTFGQQE QQLQPQLKRH NSSGGLDPNP NGQILKVPFM DPGNEIFLRN HQLQVLQQQQ 360 QQQLGYPPGL QFLPQQKAMS PKPKVVGLGD EMSYHNPPQQ QHQHALLDQL YKAAELVGTG 420 NFSYAQGILA RLNHQLSPVG KPLQRAAFYF KEALQLLLLM NNPVNPPPPR CPTPFDVIFK 480 MGAYKVFSEI SPLIQFVNFT CNQALLEALD DVDRIHIVDF DIGFGAQWAS FMQELSLRSR 540 GAPSLKITAF ASPSTHHPIE LGLMRENLTQ FANDIGISFE FEVVNFDSLN QNSFPLPFTR 600 SSENEAIAVN FPLWCSSNQP AMLPSLLRFI KQLSPKIVVS LDRGCDRSDL PFPQHMLQAL 660 QSYINLLESL DAINMNSDAV NKIERFLLQP RIESTVLGRL RAPERMPLWK TLFASAGFTP 720 VTFSNFTETQ AECVAKRTSV RGFQVEKRQA SLVLCWQRRE LISASAWRC*

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence Send to blast

MGKGELEFSA AFSSSSPICS GFAEKWVKKG EEQQEQELDE EQEEGFSYFA LPNNEPTSVL  60
HMRSPSPPTS ASTLSSSFGG GGGGGGGCVP SLPPETPAVE PVAGAGVGNA IFPGGLERCG  120
VGLEDLESMW SETAGPEPSF LRWFAGDVED PSLGSKSVLA NGNIPFDLDG NAGIGIVDQG  180
SEFDTGSGNV LANINPNLSF PLAACAGFSD VNGNNKSFNR NTCGGVVNYK SSSLGSNNRH  240
GNFNVQNPIF TGSLENLVVP VSGMIYPQQL QPFESPDEKP QNLNTQVLLN QHQQPQNPSF  300
FVPLTFGQQE QQLQPQLKRH NSSGGLDPNP NGQILKVPFM DPGNEIFLRN HQLQVLQQQQ  360
QQQLGYPPGL QFLPQQKAMS PKPKVVGLGD EMSYHNPPQQ QHQHALLDQL YKAAELVGTG  420
NFSYAQGILA RLNHQLSPVG KPLQRAAFYF KEALQLLLLM NNPVNPPPPR CPTPFDVIFK  480
MGAYKVFSEI SPLIQFVNFT CNQALLEALD DVDRIHIVDF DIGFGAQWAS FMQELSLRSR  540
GAPSLKITAF ASPSTHHPIE LGLMRENLTQ FANDIGISFE FEVVNFDSLN QNSFPLPFTR  600
SSENEAIAVN FPLWCSSNQP AMLPSLLRFI KQLSPKIVVS LDRGCDRSDL PFPQHMLQAL  660
QSYINLLESL DAINMNSDAV NKIERFLLQP RIESTVLGRL RAPERMPLWK TLFASAGFTP  720
VTFSNFTETQ AECVAKRTSV RGFQVEKRQA SLVLCWQRRE LISASAWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-34	425	768	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681860	0.0	LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008448862.1	0.0	PREDICTED: scarecrow-like protein 6
Swissprot	O81316	1e-126	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A1S3BKP2	0.0	A0A1S3BKP2_CUCME; scarecrow-like protein 6
STRING	XP_008448862.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13269	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-125	GRAS family protein

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]