PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C013173P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 561aa MW: 63256.5 Da PI: 4.7531 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.9 | 3.3e-52 | 16 | 142 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrFhPtd+el+ +yLk+k+ g+k++l +v++++d+yk++P++Lp +k+k+++++w+fF++rd+ky++g ++nrat++gyWk tgkd++v++ MELO3C013173P1 16 PPGFRFHPTDDELILYYLKRKICGRKIKL-DVVADIDVYKWDPEELPglSKLKTGDRQWFFFCPRDRKYPNGAKSNRATSQGYWKVTGKDRTVKC 109 8****************************.99***************6559999***************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kktLvfy+grapkge+tdWvmhey++ MELO3C013173P1 110 -NSRNVGVKKTLVFYRGRAPKGERTDWVMHEYTM 142 .999****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-58 | 13 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.03 | 15 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-27 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 561 aa Download sequence Send to blast |
MKLLRLTSAD DDNPWPPGFR FHPTDDELIL YYLKRKICGR KIKLDVVADI DVYKWDPEEL 60 PGLSKLKTGD RQWFFFCPRD RKYPNGAKSN RATSQGYWKV TGKDRTVKCN SRNVGVKKTL 120 VFYRGRAPKG ERTDWVMHEY TMNEEELTRC TNVQSYYAVY KVFKKSGPGP KNGEQYGAPF 180 KEEDWVDEEF RDFNFSDDQE IPAEKPKMDA TDIEGETCQA THFSLDDFDR WMKQISDEDL 240 FQSLEADPCA NSLPLGGGQK DYASTIDLHS QEYILPRSVE VPNSKQQPSI SPESNSNSDV 300 SQLHPFQNHD AKSPPNVSEL ASFLFEGDYL EMDDLVGPEF NLSNTQKPSG SGNLQLEEIN 360 GLNELDQFHD AVMFLDDFGP LEYGPSPNLY KNENSSNVTN PMDGQFQSNP AITGQIGNQM 420 LPDSAMNGLT LSEMQRTSGV LCDSSNFVGE ANENEVGEHN SASRVSSALW AFVESIPTTP 480 ASAAEVNQSF DFDRIPSFSR RRLNMNSTTV SSINSSSLMT RRSGRSKKGR FFLFSIVGAL 540 FAILWVFMGA VRMWQRCISL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-48 | 1 | 142 | 1 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681798 | 0.0 | LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008447750.1 | 0.0 | PREDICTED: NAC domain-containing protein 17-like | ||||
TrEMBL | A0A1S3BI46 | 0.0 | A0A1S3BI46_CUCME; NAC domain-containing protein 17-like | ||||
STRING | XP_008447750.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6131 | 34 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-127 | NAC domain containing protein 17 |