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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C012994P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 22871.3 Da PI: 4.5053 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.4e-19 | 33 | 82 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+Wv+eIr p++ + r++lg+f tae+Aa+a++ a+++++g MELO3C012994P1 33 IYRGVRRRS-WGKWVSEIRQPRK---KSRIWLGTFTTAEMAARAHDVAALSIKG 82 69****887.**********843...6**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.2E-13 | 32 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.00E-29 | 32 | 92 | No hit | No description |
SuperFamily | SSF54171 | 4.45E-20 | 33 | 93 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.9E-34 | 33 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-31 | 33 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.196 | 33 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-11 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-11 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MAESNNWNSE SESREMKRGK QRDQEQRDQK HPIYRGVRRR SWGKWVSEIR QPRKKSRIWL 60 GTFTTAEMAA RAHDVAALSI KGDSARAILN FPQLAGLLPR PVSLMPRDIQ EAAAKAAAMV 120 DFDSETVSFS NGEEGSDELG EIVELPNIEE DIRAESWNEF EFIDSVDWWG NPPFTAAEMD 180 FCAVFSDQST APVTFDRGDW E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-18 | 31 | 93 | 12 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Putative transcriptional activator. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681827 | 0.0 | LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008447541.1 | 1e-146 | PREDICTED: ethylene-responsive transcription factor TINY | ||||
Swissprot | Q39127 | 8e-51 | TINY_ARATH; Ethylene-responsive transcription factor TINY | ||||
Swissprot | Q9LYD3 | 9e-51 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A1S3BHN5 | 1e-145 | A0A1S3BHN5_CUCME; ethylene-responsive transcription factor TINY | ||||
STRING | XP_008447541.1 | 1e-146 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 2e-49 | ERF family protein |
Publications ? help Back to Top | |||
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