PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C012573P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 326aa MW: 37340.9 Da PI: 7.4025

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C012573P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.8	4.3e-53	12	147	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeel+ +yL+kkv+ + +el +vi+evd++k+ePwdL+ k ++ + +++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ MELO3C012573P1 12 VPPGFRFHPTDEELLYYYLRKKVSFEAIEL-DVIREVDLNKLEPWDLKdKcRIGSgHQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTI 105 69**************************.9***********843444443666******************************** PP NAM 93 lsk.....kgelvglkktLvfykgrapkgektdWvmheyrle 129 + + +++ +g++ktLvfy+grap+g+ktdW+mheyrle MELO3C012573P1 106 HMSssnsnSKRIIGMRKTLVFYTGRAPHGQKTDWIMHEYRLE 147 998776655666**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-58	8	166	IPR003441	NAC domain
PROSITE profile	PS51005	58.234	12	166	IPR003441	NAC domain
Pfam	PF02365	8.2E-28	13	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003002	Biological Process	regionalization
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0010455	Biological Process	positive regulation of cell fate commitment
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MMPENEQQLV SVPPGFRFHP TDEELLYYYL RKKVSFEAIE LDVIREVDLN KLEPWDLKDK 60 CRIGSGHQNE WYFFSHKDKK YPTGTRTNRA TSAGFWKATG RDKTIHMSSS NSNSKRIIGM 120 RKTLVFYTGR APHGQKTDWI MHEYRLEHHD PEVQEDGWVV CRVFKKKSQK PEVPEEQHLD 180 YYAHTKLGGS SGSAEGTGMG EPKNNNNHMQ EPHNNNDYSF DGCMQLPQLF SPESSSVPTL 240 PISLNAAAAA VECPQNIWRL SCGVVQHERL NTTDWSFLNR LLALDQQSRS KSTLSDDLTI 300 SRNFSFPFPY PYSLPSGPDF IKFSK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-49	10	168	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-49	10	168	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-49	10	168	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-49	10	168	15	167	NO APICAL MERISTEM PROTEIN
3swm_A	4e-49	10	168	18	170	NAC domain-containing protein 19
3swm_B	4e-49	10	168	18	170	NAC domain-containing protein 19
3swm_C	4e-49	10	168	18	170	NAC domain-containing protein 19
3swm_D	4e-49	10	168	18	170	NAC domain-containing protein 19
3swp_A	4e-49	10	168	18	170	NAC domain-containing protein 19
3swp_B	4e-49	10	168	18	170	NAC domain-containing protein 19
3swp_C	4e-49	10	168	18	170	NAC domain-containing protein 19
3swp_D	4e-49	10	168	18	170	NAC domain-containing protein 19
4dul_A	3e-49	10	168	15	167	NAC domain-containing protein 19
4dul_B	3e-49	10	168	15	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:19081078, ECO:0000269\|PubMed:20197506}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00250	DAP	Transfer from AT1G79580	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681800	0.0	LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008447060.1	0.0	PREDICTED: NAC domain-containing protein 76 isoform X2
Swissprot	Q9MA17	2e-95	SMB_ARATH; Protein SOMBRERO
TrEMBL	A0A1S3BFZ6	0.0	A0A1S3BFZ6_CUCME; NAC domain-containing protein 76 isoform X2
STRING	XP_008447060.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7204	34	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	4e-95	NAC family protein

Publications ? help Back to Top
Fendrych M, et al. Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis. Curr. Biol., 2014. 24(9): p. 931-40 [PMID:24726156] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]