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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C012512P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 90aa MW: 10159.3 Da PI: 6.516 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.8 | 2.9e-09 | 10 | 58 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 ++WT+ + + +a +++ + +W +a+ +g +t++++k ++q +l MELO3C012512P1 10 NAWTKMQNKTFEKALAEYDQDtpeRWVNVAKAVG-EKTEEEVKRHYQLLL 58 68******************9*************.9***********875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.4 | 4 | 58 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.5E-8 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.36E-12 | 10 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.6E-7 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-6 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.06E-7 | 11 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MASMSSHGSN AWTKMQNKTF EKALAEYDQD TPERWVNVAK AVGEKTEEEV KRHYQLLLHD 60 VKHIESGNVP FPYPTTSSDD DLPRKRGVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-26 | 1 | 86 | 1 | 86 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681800 | 1e-149 | LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017. | |||
GenBank | LN713255 | 1e-149 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008447294.1 | 4e-62 | PREDICTED: protein RADIALIS-like 2 | ||||
Swissprot | F4JVB8 | 4e-27 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A1S3BHZ4 | 1e-60 | A0A1S3BHZ4_CUCME; protein RADIALIS-like 2 | ||||
STRING | XP_008447294.1 | 2e-61 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31420 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-29 | RAD-like 1 |
Publications ? help Back to Top | |||
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