PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012447P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 470aa    MW: 52571.4 Da    PI: 5.1508
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012447P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4501.5e-137484621373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl cA+ v+ g+ e+a+  L+++s+laspdgd+mqR+aayfteALa r+++s+++l kal++++    ++ ee+ a++lf+e++P+lk+++
  MELO3C012447P1  48 LIHLLLGCANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKIL--SVPEEILAQRLFFELCPFLKLAY 140
                     689*************************************************************988887..59********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI ea+ege+++HiiDf   +++QW++Llq+L +Rp+gpp+lRiTg+++    +ke le+++ rL++ Ae+ ++pf+f++ v+++le+l+
  MELO3C012447P1 141 VMTNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHLRITGIHE----QKEVLEQMALRLTEEAEKWDIPFQFTP-VVSKLENLD 230
                     ******************************************************....9**************************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll.....................................................desvsleserdevLklvk 232
                     le+Lrvk+gEalaV++vl+lh++l                                                     +     +++ +++L +++
  MELO3C012447P1 231 LESLRVKTGEALAVSSVLELHSVLatdddkktspsasknlqkllcmkqrtlgewletdslqvfsspdsasvcspsglN----PSQKMTSFLTALW 321
                     *******************************************************************99999743333....3335677****** PP

            GRAS 233 slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
                     +lsPkv+v++eqe+++n++ F+er+leal++y+alfd+le++++r s er+ vE++llg+ei+n++acegaer+erhe+lekW  rle++GF++v
  MELO3C012447P1 322 GLSPKVMVITEQESNLNGSAFMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGAERTERHEKLEKWILRLESVGFGKV 416
                     *********************************************************************************************** PP

            GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     pls++ +   ++ll+ ++ dgy+++ee+g l+++W+drpL+svSaW
  MELO3C012447P1 417 PLSYHSMLLGSRLLQSYGYDGYKIKEENGFLFICWQDRPLFSVSAW 462
                     ********************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.80522443IPR005202Transcription factor GRAS
PfamPF035145.2E-13548462IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MAGMFNGEGS SSVTSSPLQF FPWSLSPGIG SPYPFLRELK SEERGLCLIH LLLGCANQVA  60
IGNIENANVG LEQISHLASP DGDTMQRIAA YFTEALADRI LKSWPGLHKA LNSTKILSVP  120
EEILAQRLFF ELCPFLKLAY VMTNQAIIEA MEGERMIHII DFKSCEPAQW INLLQTLKDR  180
PDGPPHLRIT GIHEQKEVLE QMALRLTEEA EKWDIPFQFT PVVSKLENLD LESLRVKTGE  240
ALAVSSVLEL HSVLATDDDK KTSPSASKNL QKLLCMKQRT LGEWLETDSL QVFSSPDSAS  300
VCSPSGLNPS QKMTSFLTAL WGLSPKVMVI TEQESNLNGS AFMERVLEAL NFYAALFDCL  360
ESTVSRSSIE RQRVEKMLLG EEIKNIIACE GAERTERHEK LEKWILRLES VGFGKVPLSY  420
HSMLLGSRLL QSYGYDGYKI KEENGFLFIC WQDRPLFSVS AWGFQRQSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-65324622377Protein SCARECROW
5b3h_D2e-65324622377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446918.10.0PREDICTED: scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1S3BH330.0A0A1S3BH33_CUCME; scarecrow-like protein 3 isoform X1
STRINGXP_008446918.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]