PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MELO3C012441P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 1633aa MW: 177906 Da PI: 6.128

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C012441P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.4	3.8e-09	970	1011	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT eE ++++av +G++ ++ I+r++ +++ qck ++ MELO3C012441P1 970 SNWTDEEKVIFLQAVSSYGKD-FDMISRCIR-SKSRDQCKIFFS 1011 58***************99.*****.******8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.57E-12	740	802	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.656	752	803	IPR017884	SANT domain
SMART	SM00717	3.1E-5	753	801	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-5	964	1012	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.4E-10	966	1018	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.189	967	1018	IPR017884	SANT domain
SMART	SM00717	8.6E-8	968	1016	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-6	971	1010	IPR001005	SANT/Myb domain
CDD	cd00167	1.78E-6	971	1010	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1633 aa Download sequence Send to blast
MPPEPLPWDR KDLFKERKHE KSEAIGSAAR WRDSYHGSRE FNRWGSADLR RPTGHGKQGG 60 WHQFSEDSSH GYGPSRSFSD RVIEDESFRP SVPRGDGKYI RIGRESRGSF SHRDWRSHSR 120 DTNNGFGNPS RRPSSQDVSS DQRSVDDTVT YSSPQSFHGL ENGPRSDVEV SLGSTDWKPL 180 KWSRSGSLSS RGSAYSSSTN SKNEKADLPL RVASPIESPS AEATACVTSS LPSEDTISRK 240 KPRLGWGDGL AKYEKEKVDV PDGSLRKEVA LLSSGSGELT HSLGSNFAEK SPKTLPFSDC 300 ASPATPSSFA CSSSSGLEDK PFSKGASADG MICSSPGSGS QNLQKLLCSI EKMEISSIAN 360 LGSSLVELFH SDDPNTIESC FGKSTLNKLL AYKGEISKTL EMTESEIDSL ENELKSLKSG 420 NGGNVSNKKS CSATRLVESS TYFKEQDGIS CIAPRPAPLV VVSSSDATVE KVPLCKGDMG 480 VEDVDTKADE IDSPGTVTSK FNEPSRVVKE NTSDIVDNGH CSVVTDMIVP GKMEGNFPIS 540 EPFVDERKTT GSGNECILAK SCSSESFNGD LMAQAGSRSS LCDSIFACNK EYASRAAEVI 600 FKRSPVGVCK ISSKSTKYVS CSETEKLIKE KFVSRKKFLK FKESALTLRF KALQQSWKEC 660 LLHSVKKCRS RPPKKKGAES KGDTFWPSEV QVFISLSFDS ASKLLLNPQI KLYRNTLKMP 720 AMILDKKEKM ALRFISHNGL VEDPCAVEKE RNLINPWTSA EKEIFWEKLS LFGKDFKKIS 780 SFLDLKTTAD CIQFYYKNHK SDSFKKNKNL ELGKQMKSSA ITYLVTSGKK WNPDANATSL 840 DILGVASVMA AQAEYDIGNQ QKCSRHLGTG KDVESKVSWS ASTPNKSNLD DLQTEKETVA 900 ADVLAGISGS ISSEALSSCI TSAIDPREEL REQKCYKVDS AAKLPSLSDV MQKTDNEPCS 960 DDSSEDVDSS NWTDEEKVIF LQAVSSYGKD FDMISRCIRS KSRDQCKIFF SKARKCLGLD 1020 LMHTSGDVGE TPGNGNDISG SGTDTEDHCV VEICGGRGSD ESISKSINGV STSVNINHEE 1080 SVSAATVNMR TSMEFEGSTA LQQLDEKGAE AVGNMIFETL KEEDVPNPSQ PMHDQKIEGS 1140 SENTEGGKSC NEPDILRSES VSTVDENSAA VSECRATVKL AIGEEEVGSD ANLHSQSTMQ 1200 CSGQDSTGYD SNIALEGSSI GLDPQILHPN ILKVEPVEKK SCIKSEENFL AVRNSDTGVI 1260 GREQMLNQDV SSSTLVLQDV SDADQKPMNR DKDDDDEHRN NLLRNSESPK FPRSYPFNKQ 1320 IFEDINRNIN HTYFPVVQGL SKPDINCNNK YVPEGQYLQN CNSSKPHNPA ELPFLSQNIE 1380 LGHNHQKNAS GSGSASDSDV PRRKGDVKLF GQILSHAPSQ QNSSSGSNEC GEKKGLHNSS 1440 SKSCDMGEHV PLRSYGFWDG SRIQTGLSAL PDSAILQSKY PAAFSGYSGT SVKTEQQTLQ 1500 ALANNSDQSL NEVVSAFPTK DGVVDYHSYR SRDGVKMRPF PVDIFSEMHR RNGFDAVSLS 1560 SLQQQGRVLV GMNVVGRGGI LMGGSCTGVS DPVAAIKMHY AKADQYAGQP GSMFTREDGS 1620 WRGGKGGDLG SR*

Sequence ? help Back to Top

Protein Sequence Length: 1633 aa Download sequence Send to blast

MPPEPLPWDR KDLFKERKHE KSEAIGSAAR WRDSYHGSRE FNRWGSADLR RPTGHGKQGG  60
WHQFSEDSSH GYGPSRSFSD RVIEDESFRP SVPRGDGKYI RIGRESRGSF SHRDWRSHSR  120
DTNNGFGNPS RRPSSQDVSS DQRSVDDTVT YSSPQSFHGL ENGPRSDVEV SLGSTDWKPL  180
KWSRSGSLSS RGSAYSSSTN SKNEKADLPL RVASPIESPS AEATACVTSS LPSEDTISRK  240
KPRLGWGDGL AKYEKEKVDV PDGSLRKEVA LLSSGSGELT HSLGSNFAEK SPKTLPFSDC  300
ASPATPSSFA CSSSSGLEDK PFSKGASADG MICSSPGSGS QNLQKLLCSI EKMEISSIAN  360
LGSSLVELFH SDDPNTIESC FGKSTLNKLL AYKGEISKTL EMTESEIDSL ENELKSLKSG  420
NGGNVSNKKS CSATRLVESS TYFKEQDGIS CIAPRPAPLV VVSSSDATVE KVPLCKGDMG  480
VEDVDTKADE IDSPGTVTSK FNEPSRVVKE NTSDIVDNGH CSVVTDMIVP GKMEGNFPIS  540
EPFVDERKTT GSGNECILAK SCSSESFNGD LMAQAGSRSS LCDSIFACNK EYASRAAEVI  600
FKRSPVGVCK ISSKSTKYVS CSETEKLIKE KFVSRKKFLK FKESALTLRF KALQQSWKEC  660
LLHSVKKCRS RPPKKKGAES KGDTFWPSEV QVFISLSFDS ASKLLLNPQI KLYRNTLKMP  720
AMILDKKEKM ALRFISHNGL VEDPCAVEKE RNLINPWTSA EKEIFWEKLS LFGKDFKKIS  780
SFLDLKTTAD CIQFYYKNHK SDSFKKNKNL ELGKQMKSSA ITYLVTSGKK WNPDANATSL  840
DILGVASVMA AQAEYDIGNQ QKCSRHLGTG KDVESKVSWS ASTPNKSNLD DLQTEKETVA  900
ADVLAGISGS ISSEALSSCI TSAIDPREEL REQKCYKVDS AAKLPSLSDV MQKTDNEPCS  960
DDSSEDVDSS NWTDEEKVIF LQAVSSYGKD FDMISRCIRS KSRDQCKIFF SKARKCLGLD  1020
LMHTSGDVGE TPGNGNDISG SGTDTEDHCV VEICGGRGSD ESISKSINGV STSVNINHEE  1080
SVSAATVNMR TSMEFEGSTA LQQLDEKGAE AVGNMIFETL KEEDVPNPSQ PMHDQKIEGS  1140
SENTEGGKSC NEPDILRSES VSTVDENSAA VSECRATVKL AIGEEEVGSD ANLHSQSTMQ  1200
CSGQDSTGYD SNIALEGSSI GLDPQILHPN ILKVEPVEKK SCIKSEENFL AVRNSDTGVI  1260
GREQMLNQDV SSSTLVLQDV SDADQKPMNR DKDDDDEHRN NLLRNSESPK FPRSYPFNKQ  1320
IFEDINRNIN HTYFPVVQGL SKPDINCNNK YVPEGQYLQN CNSSKPHNPA ELPFLSQNIE  1380
LGHNHQKNAS GSGSASDSDV PRRKGDVKLF GQILSHAPSQ QNSSSGSNEC GEKKGLHNSS  1440
SKSCDMGEHV PLRSYGFWDG SRIQTGLSAL PDSAILQSKY PAAFSGYSGT SVKTEQQTLQ  1500
ALANNSDQSL NEVVSAFPTK DGVVDYHSYR SRDGVKMRPF PVDIFSEMHR RNGFDAVSLS  1560
SLQQQGRVLV GMNVVGRGGI LMGGSCTGVS DPVAAIKMHY AKADQYAGQP GSMFTREDGS  1620
WRGGKGGDLG SR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	5e-16	714	805	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	5e-16	714	805	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008446909.2	0.0	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103489481
TrEMBL	A0A1S3BG74	0.0	A0A1S3BG74_CUCME; LOW QUALITY PROTEIN: uncharacterized protein LOC103489481
STRING	XP_008446909.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4986	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-103	MYB family protein