PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012218P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family G2-like
Protein Properties Length: 247aa    MW: 27499.8 Da    PI: 6.365
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012218P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like37.26.6e-12206230125
         G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                     k+r++W++eLH+rFv+a++qLGG++
  MELO3C012218P1 206 KQRRCWSSELHRRFVHALQQLGGPH 230
                     79*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-9203234IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-8206232IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDFVDNFLDI RVGLDLSNYA DALDRERQKI QVFQRELPLC LELVTRAIDS CRQQLSGVST  60
ESSEHTSSDR PVLEEFIPIN KPCVNSHFEI EEDEQSKPGK IELGRSDWLK SAQLWNQSSD  120
PPITEDVAKE TTSSVVEVKK KNGGGGAFQP FEKTTPLKTE TAVVVGKTTG SPPIPEATTS  180
STAETASKCG GGTTKREDKE SQSQRKQRRC WSSELHRRFV HALQQLGGPH GTKKYLNSFF  240
NFCFIF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446559.11e-158PREDICTED: LOW QUALITY PROTEIN: transcription factor LUX
TrEMBLA0A1S3BG561e-157A0A1S3BG56_CUCME; LOW QUALITY PROTEIN: transcription factor LUX
STRINGXP_008446559.11e-158(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39183363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.15e-46G2-like family protein