PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012114P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 293aa    MW: 33316.6 Da    PI: 8.4132
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012114P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.31.8e-5491341128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL++++++k++++ ++i+evdiyk++PwdLp+k++++e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++s 
  MELO3C012114P1   9 LPPGFRFHPTDEELIMFYLRNQATSKPCPV-SIIPEVDIYKFDPWDLPEKADSGENEWYFFSPRDRKYPNGVRPNRAAVSGYWKATGTDKAIYS- 101
                     79****************************.89***************99999*****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++ vg+kk Lvfykg+ pkg+ktdW+mheyrl
  MELO3C012114P1 102 ASKYVGVKKALVFYKGKPPKGVKTDWIMHEYRL 134
                     9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-667161IPR003441NAC domain
PROSITE profilePS5100561.2419161IPR003441NAC domain
PfamPF023651.8E-2610134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MKKKTCTELP PGFRFHPTDE ELIMFYLRNQ ATSKPCPVSI IPEVDIYKFD PWDLPEKADS  60
GENEWYFFSP RDRKYPNGVR PNRAAVSGYW KATGTDKAIY SASKYVGVKK ALVFYKGKPP  120
KGVKTDWIMH EYRLIESNKQ SMKHSGSMRL DDWVLCRIYK KRHSNKGLLE EKTEELATQN  180
DVIEGNGQGQ QMMKFPRTFS ITHLLDLDYL GPISQLFNDT SSINPTLGFQ NNTAAAAAAF  240
TSVGKVEEGE IMPLDYSSSS TDFQVNHNNN FFNQPIFVNN PANDWNAHGF SR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-71516413168NO APICAL MERISTEM PROTEIN
1ut4_B3e-71516413168NO APICAL MERISTEM PROTEIN
1ut7_A3e-71516413168NO APICAL MERISTEM PROTEIN
1ut7_B3e-71516413168NO APICAL MERISTEM PROTEIN
3swm_A4e-71516416171NAC domain-containing protein 19
3swm_B4e-71516416171NAC domain-containing protein 19
3swm_C4e-71516416171NAC domain-containing protein 19
3swm_D4e-71516416171NAC domain-containing protein 19
3swp_A4e-71516416171NAC domain-containing protein 19
3swp_B4e-71516416171NAC domain-containing protein 19
3swp_C4e-71516416171NAC domain-containing protein 19
3swp_D4e-71516416171NAC domain-containing protein 19
4dul_A3e-71516413168NAC domain-containing protein 19
4dul_B3e-71516413168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446385.10.0PREDICTED: NAC transcription factor 29
SwissprotK4BWV21e-119NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLA0A1S3BEF90.0A0A1S3BEF9_CUCME; NAC transcription factor 29
STRINGXP_008446385.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41033262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-111NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]