PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C012091P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 393aa MW: 44492 Da PI: 8.0623

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C012091P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.5	4.4e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yLk+k+++k+l + e ik++diyk++PwdLpk ++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ MELO3C012091P1 14 MLPGFRFHPTDEELVGFYLKRKIQQKPLLI-ELIKQIDIYKYDPWDLPKLGGTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSS 107 579**********************999.89***********87778999**********************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra kg+ktdW+mhe+rl MELO3C012091P1 108 dGTKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 141 56667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-57	12	172	IPR003441	NAC domain
PROSITE profile	PS51005	56.83	14	172	IPR003441	NAC domain
Pfam	PF02365	9.9E-26	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MEERNDSDKV EEVMLPGFRF HPTDEELVGF YLKRKIQQKP LLIELIKQID IYKYDPWDLP 60 KLGGTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV 120 FYKGRAAKGV KTDWMMHEFR LPSLNDPLPT KRLIDKPIPP NDSWAICRIF KKTNSTAQRA 180 LSLSSNNMIP PLLSETNTSD DNNNNHHHQN PYNNFPTKFP TLPSFESHQY SSISNNNITY 240 PNFDFVASCK PFNSQIISNN RSFSHLPILA EPPPPPPSNT TDQEKCRVDL SSILLNMSSS 300 VLGDFGIMKP NDTVDLHAQH QQFMNNNYPQ TFSHDQMQGA ASDQFVGAIR SNVIGSYPLN 360 ITDLGKPNFI WDSSSSCPSE VSTSLSTTNC YT*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MEERNDSDKV EEVMLPGFRF HPTDEELVGF YLKRKIQQKP LLIELIKQID IYKYDPWDLP  60
KLGGTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV  120
FYKGRAAKGV KTDWMMHEFR LPSLNDPLPT KRLIDKPIPP NDSWAICRIF KKTNSTAQRA  180
LSLSSNNMIP PLLSETNTSD DNNNNHHHQN PYNNFPTKFP TLPSFESHQY SSISNNNITY  240
PNFDFVASCK PFNSQIISNN RSFSHLPILA EPPPPPPSNT TDQEKCRVDL SSILLNMSSS  300
VLGDFGIMKP NDTVDLHAQH QQFMNNNYPQ TFSHDQMQGA ASDQFVGAIR SNVIGSYPLN  360
ITDLGKPNFI WDSSSSCPSE VSTSLSTTNC YT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-52	5	179	7	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-52	5	179	7	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-52	5	179	7	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-52	5	179	7	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-52	5	179	10	174	NAC domain-containing protein 19
3swm_B	6e-52	5	179	10	174	NAC domain-containing protein 19
3swm_C	6e-52	5	179	10	174	NAC domain-containing protein 19
3swm_D	6e-52	5	179	10	174	NAC domain-containing protein 19
3swp_A	6e-52	5	179	10	174	NAC domain-containing protein 19
3swp_B	6e-52	5	179	10	174	NAC domain-containing protein 19
3swp_C	6e-52	5	179	10	174	NAC domain-containing protein 19
3swp_D	6e-52	5	179	10	174	NAC domain-containing protein 19
4dul_A	5e-52	5	179	7	171	NAC domain-containing protein 19
4dul_B	5e-52	5	179	7	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008446344.1	0.0	PREDICTED: protein FEZ
Swissprot	Q9ZVH0	1e-104	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1S3BEU8	0.0	A0A1S3BEU8_CUCME; protein FEZ
STRING	XP_008446344.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-105	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]