![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C011994P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 475aa MW: 53603.1 Da PI: 6.0478 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.6 | 5.9e-10 | 291 | 337 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ + ErrRR++i++++ +Lr l+P+ + K++ a+i A+ YI++L+ MELO3C011994P1 291 KNLMTERRRRNKIRDRLYTLRALVPNiS------KMDRASIIVDAIGYIRELE 337 55689*********************66......****************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.6E-16 | 11 | 157 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 7.33E-16 | 286 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.408 | 287 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-15 | 289 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.6E-8 | 291 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-11 | 293 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 6.05E-4 | 409 | 469 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 6.8E-4 | 425 | 472 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 475 aa Download sequence Send to blast |
MRSFEGALEF LRPLVEIKLW DYCIVWKSRD DDSLRFIDWV GCCCSGGVSD AGGKEEAGET 60 IPAALCKDTR FRHFRRTNAC QALAQFPSSI SLNTGVHGDV LISNQPMWLT SGEASYFSSF 120 SHELTGTRVL IPVSGGIVEL FATKRMPREG EVIDFVMAHC NISLEQEFET ESALLDAGLN 180 EKILSSSTKY YSLNWPDPQP FLGFKSKLEI LPSVSQSSSF PGCGEGSSSG SKPSPGLFNQ 240 PIHTSFESKA ATHREELLEQ QKNVVSDHSK ILQKDEAKTG EKQEKEVYKS KNLMTERRRR 300 NKIRDRLYTL RALVPNISKM DRASIIVDAI GYIRELEENV KSLQNELIQL EHKDCQKNKH 360 LKISPLEKTN DDINSWSFVQ DDQPMFILNE EKPMEVEVEV MRINERDFLI KLFCKRKQGG 420 VVSSIEAMYS LGLQVIDVNI TTFGGMVLNI FHVEANENDI QPKRLRDSLM KLTS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 0.0 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008446203.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES | ||||
TrEMBL | A0A1S3BFB9 | 0.0 | A0A1S3BFB9_CUCME; transcription factor ABORTED MICROSPORES | ||||
TrEMBL | E5GBJ2 | 0.0 | E5GBJ2_CUCME; BHLH transcription factor | ||||
STRING | XP_008446203.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12265 | 30 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16910.1 | 1e-74 | bHLH family protein |