PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011792P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 313aa    MW: 33715.1 Da    PI: 7.3678
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011792P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019115137123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C++ Fs++  L  H++ H
  MELO3C011792P1 115 FSCNFCKREFSTSQALGGHQNAH 137
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.83E-6112142No hitNo description
Gene3DG3DSA:3.30.160.604.6E-4113141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.531115142IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAETGKSKQN SPSEASSISA TSDGGGSSDR PMATMKMEMV VATDEISSED RQSQESNSRL  60
LLDLKLSNNE NNSGNGTAAE RTMTPVPATT AGNNSSSSQG HTSNELSSNS KGRVFSCNFC  120
KREFSTSQAL GGHQNAHKQE RAMAKRRQGM ELGSGANVVA GPSYLASYYS PYSSLSPHPL  180
YGSSLGKSLG IRMDSMIHKP SSYRWLGSPT LQFHAGVDGG WASRPVIVNT NNNNNNNSKL  240
LTFERLKMEG IQAHNGGFRL STAINANEST RRFEEDGTIS IPSLDRNSEP PVLKMDHHVE  300
TENHELDLTL KL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446993.10.0PREDICTED: zinc finger protein 1-like
TrEMBLA0A1S3BGD70.0A0A1S3BGD7_CUCME; zinc finger protein 1-like
STRINGXP_008446993.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.11e-18C2H2 family protein