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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C011698P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 228aa MW: 26770.2 Da PI: 10.7074 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.1 | 2.3e-14 | 14 | 58 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W+ Ia++++ gR++ c++rw++ MELO3C011698P1 14 RGHWRPAEDEKLRQLVQQHGPQNWNFIAEKLQ-GRSG-ICRLRWFNQ 58 899*****************************.****.9*****996 PP | |||||||
2 | Myb_DNA-binding | 59.7 | 6.6e-19 | 65 | 108 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l++a+ +G++ W++Iar ++ gRt++ +k++w+ MELO3C011698P1 65 RRPFTEEEEERLLEAHGIHGNK-WALIARLFP-GRTDNAVKNHWHV 108 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.226 | 9 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-27 | 12 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-9 | 13 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-13 | 14 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 15 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.91E-10 | 17 | 57 | No hit | No description |
PROSITE profile | PS51294 | 28.137 | 60 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 6.3E-16 | 64 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-16 | 65 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-22 | 67 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.11E-5 | 79 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAGVAGDDAK SCPRGHWRPA EDEKLRQLVQ QHGPQNWNFI AEKLQGRSGI CRLRWFNQLD 60 PRINRRPFTE EEEERLLEAH GIHGNKWALI ARLFPGRTDN AVKNHWHVIM ARKQRQQSNN 120 NNLPTRKKIT SNYQQFLLHS KLISHSHGDG HGGGELFGRF WQPKIRNPNN RWDYNLNMFL 180 RSCYQNSFRS ENFRLNIRSK STIKFEILNE SVERKDAKFI DFLGVEQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 14 | 113 | 7 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681817 | 0.0 | LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023535350.1 | 6e-86 | transcription factor MYB105-like | ||||
TrEMBL | A0A0A0LKW9 | 1e-110 | A0A0A0LKW9_CUCSA; Uncharacterized protein | ||||
STRING | XP_008445798.1 | 1e-147 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73410.1 | 5e-55 | myb domain protein 54 |