PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011295P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 319aa    MW: 35054.4 Da    PI: 9.1944
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011295P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.47e-29149209160
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                     ++Dgy+WrKYGqK+ k+++ pr+YY+C++a +Cpvk+kv+rs edp +++ tYeg+Hnh+k
  MELO3C011295P1 149 VKDGYQWRKYGQKVTKDNPSPRAYYKCSFApTCPVKRKVQRSVEDPCYLVATYEGQHNHPK 209
                     58***************************99****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.29144210IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-28145210IPR003657WRKY domain
SuperFamilySSF1182902.22E-25146210IPR003657WRKY domain
SMARTSM007741.3E-32149209IPR003657WRKY domain
PfamPF031063.7E-23150208IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEPTTTTINT SLDLNLNPPP YTDDQSHPPT PNSPLKQQAP TTGILAEKLN RISSENKKLN  60
QMLGVVVENY SVLKNQVIDL LMKSRKRKAA PGCDNCCNFN RSASDQYCGC CSDDNDSCYN  120
NKRPRENNSK PKVMRVLVPT PVSDSTLIVK DGYQWRKYGQ KVTKDNPSPR AYYKCSFAPT  180
CPVKRKVQRS VEDPCYLVAT YEGQHNHPKP NSGIEYQLVG PINLGSNTKL DSSNNVSSSP  240
SSSIKSPSSS SSLIPSISLD YLTKSQPQIP SPSSSNSSSS TQKLLVQQMA TLLTRDPNFT  300
RALATAITGN MVDNEIWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-191482101677Probable WRKY transcription factor 4
2lex_A1e-191482101677Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840140.0GU984014.1 Cucumis sativus WRKY protein (WRKY12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445262.10.0PREDICTED: probable WRKY transcription factor 40
TrEMBLA0A1S3BC940.0A0A1S3BC94_CUCME; probable WRKY transcription factor 40
STRINGXP_008445262.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3140822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.14e-62WRKY DNA-binding protein 40