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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C011286P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 176aa MW: 19784.5 Da PI: 8.488 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.7 | 2.9e-18 | 7 | 55 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 +++GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a+++a++ + MELO3C011286P1 7 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55 69******9.**********8.....334**********************8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.90E-33 | 6 | 66 | No hit | No description |
SMART | SM00380 | 2.0E-39 | 7 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-11 | 7 | 56 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-21 | 7 | 66 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.719 | 7 | 64 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-34 | 7 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-11 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-11 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MPRPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR 60 TNFPYDASLS RSSSSRLLSA TLTAKLHRCY MASLQLTKQS SSAARRPQTD VIRTDFSVAS 120 GIAPGERVEV DGTTAKKVKM ESVDCGEPLM IEMLDDDHIQ QMIEELLDYG GIELR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-16 | 6 | 64 | 4 | 63 | ATERF1 |
3gcc_A | 2e-16 | 6 | 64 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00526 | DAP | Transfer from AT5G25190 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 0.0 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008445253.1 | 1e-128 | PREDICTED: ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 3e-68 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A0A1S3BD40 | 1e-127 | A0A1S3BD40_CUCME; ethylene-responsive transcription factor ERF003-like | ||||
STRING | XP_008445253.1 | 1e-127 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1106 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 4e-50 | ERF family protein |
Publications ? help Back to Top | |||
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