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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C011078P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GATA | ||||||||
Protein Properties | Length: 378aa MW: 41497.5 Da PI: 4.7999 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.6 | 5.3e-16 | 229 | 265 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ MELO3C011078P2 229 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 265 *******99*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 12.942 | 65 | 100 | IPR010399 | Tify domain |
SMART | SM00979 | 4.2E-7 | 65 | 100 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.8E-10 | 68 | 99 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.1E-14 | 158 | 199 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.65 | 158 | 200 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 8.524 | 223 | 271 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.9E-8 | 223 | 276 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.75E-11 | 224 | 273 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-14 | 227 | 270 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.27E-16 | 228 | 272 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 229 | 256 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 7.5E-14 | 229 | 265 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MAAANPQPLQ ARPFQEHVQV PSMMGDDDGE YEDGGGGGGG GDVMDDVEEA HMTSVSVANH 60 GGLVMASRTS ELTLSFEGEV YVFPAVTPEK VQAVLLLLGG RDVPAGVPTM EVPYDHNNRV 120 MQIMEILLHI MWVCSYVRSC IHLQGMVDTP KRSNLSRRIA SLVRFREKRK ERCFDKKIRY 180 TVRKEVAQRM HRKNGQFASL KESSGASSWE SAHSCLQDGT RSETVLRKCQ HCGVSENNTP 240 AMRRGPAGPR TLCNACGLMW ANKGTLRDLS KGGRNVSLDH MEPETPMDVK PVIMEGEFSG 300 IQDEHGTPED PSKTMTEGSS NPSIDLDEED INETTGDLTN SLPMRIVNHS SNDDEQEPLV 360 ELANPSDTDI DIPTNFD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 152 | DTPKRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 1e-166 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 1e-166 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008444908.1 | 0.0 | PREDICTED: GATA transcription factor 24-like isoform X1 | ||||
Refseq | XP_008444909.1 | 0.0 | PREDICTED: GATA transcription factor 24-like isoform X1 | ||||
Swissprot | Q8GXL7 | 2e-67 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A1S3BAZ6 | 0.0 | A0A1S3BAZ6_CUCME; GATA transcription factor 24-like isoform X1 | ||||
STRING | XP_008444908.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3319 | 33 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.1 | 6e-63 | ZIM-like 1 |
Publications ? help Back to Top | |||
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