PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C010905P3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 166aa MW: 18700.4 Da PI: 9.9925 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.7 | 1.2e-14 | 44 | 138 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.... CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef..el 92 f+ v+ ps+v ++ l +p + ++++ + ++++++l+ + +W k++++ +++ lt+GWk+F +n+L+e D++vF+ +++s++ l MELO3C010905P3 44 FKVVMRPSHVYRRFFLFIPTQWVTKNlS-L--RNQDIILRV-GSDEWPTKFNFTPSRQCGGLTSGWKHFSIDNNLEEFDVCVFEPVNKSSGpvVL 134 778999********************53.3..344677766.6688999998877777777***********************77554440044 PP EEEE CS B3 93 vvkv 96 vk+ MELO3C010905P3 135 EVKI 138 5555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.1E-18 | 41 | 140 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.0E-13 | 44 | 140 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.29E-17 | 44 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.50E-20 | 44 | 140 | No hit | No description |
SMART | SM01019 | 9.0E-14 | 44 | 142 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.434 | 44 | 142 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MEATPVKKIG SYVEQYVSHR RAITEGEKNN ALKLAEAASS DTGFKVVMRP SHVYRRFFLF 60 IPTQWVTKNL SLRNQDIILR VGSDEWPTKF NFTPSRQCGG LTSGWKHFSI DNNLEEFDVC 120 VFEPVNKSSG PVVLEVKIFR VVEDVIPLTR VASKSNRKPT KAPEA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-16 | 12 | 145 | 16 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-16 | 12 | 145 | 16 | 146 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 1e-180 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 1e-180 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008444660.1 | 1e-117 | PREDICTED: B3 domain-containing protein REM16-like | ||||
TrEMBL | A0A1S3BAT7 | 1e-116 | A0A1S3BAT7_CUCME; B3 domain-containing protein REM16-like | ||||
STRING | XP_008444660.1 | 1e-116 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 5e-32 | B3 family protein |