PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010905P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 387aa    MW: 43671.6 Da    PI: 8.4565
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010905P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.47.3e-20251041398
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++lv+p kf   +++k++ + t+tl+ +sg +W+v l  + ++++  +++GW+eFvka+ L+++D +vF+++g+s+f   v +f+
  MELO3C010905P1  25 EQQLVIPDKFS--NNLKNKLPATVTLKGPSGATWDVGL--STSDDKLCFKRGWQEFVKAHYLEQNDLLVFRYNGTSQF--DVLIFD 104
                     678*******7..444556999****************..*********************************99999..777775 PP
2B343.17.7e-14265358195
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.... CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef..el 92 
                     f+ v+ ps+v ++  l +p + ++++ +    ++++++l+   + +W  k++++ +++   lt+GWk+F  +n+L+e D++vF+ +++s++   l
  MELO3C010905P1 265 FKVVMRPSHVYRRFFLFIPTQWVTKNlS-L--RNQDIILRV-GSDEWPTKFNFTPSRQCGGLTSGWKHFSIDNNLEEFDVCVFEPVNKSSGpvVL 355
                     778999********************53.3..344677766.6688999998877777777***********************77554440044 PP

                     EEE CS
              B3  93 vvk 95 
                      vk
  MELO3C010905P1 356 EVK 358
                     455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575124No hitNo description
SuperFamilySSF1019366.87E-2212106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.25613106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-2216104IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-1016106IPR003340B3 DNA binding domain
PfamPF023628.5E-1726103IPR003340B3 DNA binding domain
CDDcd100171.22E-1927104No hitNo description
Gene3DG3DSA:2.40.330.105.8E-17262361IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-12265360IPR003340B3 DNA binding domain
SuperFamilySSF1019368.44E-17265353IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.434265363IPR003340B3 DNA binding domain
CDDcd100171.41E-19265361No hitNo description
SMARTSM010199.0E-14265363IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGRGYLLEPF SKFTHFYQIL AGGCEQQLVI PDKFSNNLKN KLPATVTLKG PSGATWDVGL  60
STSDDKLCFK RGWQEFVKAH YLEQNDLLVF RYNGTSQFDV LIFDWKSFCE KEASYFVKIC  120
ENKKIDSGGQ AKRKLREPSL DGFDVNINNG AECDSSENII HDDSMERMIQ DVVSKATNFN  180
GQPEVFSAEP IRTVQTRRKK KTPNNTAIIS TPEPVQLSDS DMEATPVKKI GSYVEQYVSH  240
RRAITEGEKN NALKLAEAAS SDTGFKVVMR PSHVYRRFFL FIPTQWVTKN LSLRNQDIIL  300
RVGSDEWPTK FNFTPSRQCG GLTSGWKHFS IDNNLEEFDV CVFEPVNKSS GPVVLEVKIF  360
RVVEDVIPLT RVASKSNRKP TKAPEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1523336616146B3 domain-containing transcription factor VRN1
4i1k_B5e-1523336616146B3 domain-containing transcription factor VRN1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444660.10.0PREDICTED: B3 domain-containing protein REM16-like
TrEMBLA0A1S3BAT70.0A0A1S3BAT7_CUCME; B3 domain-containing protein REM16-like
STRINGXP_008444660.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-66B3 family protein