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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C010881P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 231aa MW: 26021.9 Da PI: 10.1232 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.4 | 3.3e-15 | 129 | 218 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +k +++s+v+ +l lp +f+++h +k+ +tl de+g ++ + + rk++ +++GWk+F a++L +gD vvF++++ + ++v + MELO3C010881P1 129 IKSMVRSHVSGCFWLGLPSHFCKTHL-PKND-GVMTLIDEDGDEYPIIYLARKTG----FSGGWKGFSIAHKLADGDAVVFQHIK--PTACKVYI 215 6999******************9993.3333.37***************555555....99*********************876..55578998 PP E-S CS B3 97 frk 99 fr MELO3C010881P1 216 FRV 218 885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.9E-19 | 121 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-23 | 121 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.65E-24 | 126 | 217 | No hit | No description |
SMART | SM01019 | 8.7E-22 | 128 | 219 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.926 | 128 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.5E-13 | 129 | 218 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MGISNLSYEE CRQKRVEENK KRMEALNLPL LSQALLDSSP SKSSPSKQVK PRVMQKQLVV 60 VRRSSRVAKQ PTPVYAEVLV DRVAIPRRIS RARDFSDQFY ASDEARKKKA FERALELQSR 120 LEPNYPSCIK SMVRSHVSGC FWLGLPSHFC KTHLPKNDGV MTLIDEDGDE YPIIYLARKT 180 GFSGGWKGFS IAHKLADGDA VVFQHIKPTA CKVYIFRVNG SKQESDSNNS * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 1e-114 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 1e-114 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022144315.1 | 1e-131 | B3 domain-containing protein At5g42700-like | ||||
Swissprot | Q9FMZ4 | 3e-66 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A0A0LKX3 | 1e-134 | A0A0A0LKX3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004160008.1 | 1e-155 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 3e-58 | B3 family protein |
Publications ? help Back to Top | |||
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