![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C010880P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 231aa MW: 25600.3 Da PI: 10.4057 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.2 | 9.9e-16 | 127 | 217 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp +f++ h +++ ++ +tl de+g ++ + rk++ l++GWk+F+ a++L +gD v+F++++ ++++v+ MELO3C010880P1 127 FIKSMLQSHVSGGFWLGLPSHFCKIH-LPN-RDGVMTLIDEDGDEYPTIYLARKTG----LSGGWKGFAVAHKLADGDAVIFQFIK--PTTCKVH 213 89*********************666.443.4458***************656665....***********************886..6677899 PP EE-S CS B3 96 vfrk 99 ++r+ MELO3C010880P1 214 ILRA 217 9885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-24 | 121 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.4E-20 | 121 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.03E-26 | 125 | 216 | No hit | No description |
SMART | SM01019 | 1.5E-21 | 127 | 218 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.674 | 127 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-13 | 127 | 217 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MGIANLSYEE CRRKRLEENK KRMEALNLPL LSQALIDSSP SKSSPSKLTK PRVTQKQLVV 60 VRRSSRVAKQ SAPVYAEVVI NRVVIPRRIS KARDLSNRVY ASDGARKRAF ERAEQLQSGL 120 EPNYPSFIKS MLQSHVSGGF WLGLPSHFCK IHLPNRDGVM TLIDEDGDEY PTIYLARKTG 180 LSGGWKGFAV AHKLADGDAV IFQFIKPTTC KVHILRAANS STEDSDSNSS * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 1e-113 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 1e-113 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008444633.1 | 1e-171 | PREDICTED: B3 domain-containing protein At5g42700-like | ||||
Swissprot | Q9FMZ4 | 7e-73 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A1S3BAR2 | 1e-170 | A0A1S3BAR2_CUCME; B3 domain-containing protein At5g42700-like | ||||
STRING | XP_008444633.1 | 1e-170 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-70 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|