PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C010784P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ERF

Protein Properties

Length: 670aa MW: 72258.5 Da PI: 6.0695

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C010784P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.9	1.4e-14	388	439	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s ++GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g MELO3C010784P1 388 SVFRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 439 689*************988532...5**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	9.848	282	353	IPR001471	AP2/ERF domain
SMART	SM00380	0.0062	309	359	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.9E-7	324	354	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-7	324	355	IPR016177	DNA-binding domain
SuperFamily	SSF54171	3.99E-17	388	449	IPR016177	DNA-binding domain
Pfam	PF00847	3.1E-9	388	439	IPR001471	AP2/ERF domain
CDD	cd00018	2.09E-24	388	449	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.2E-17	389	447	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.624	389	447	IPR001471	AP2/ERF domain
SMART	SM00380	3.5E-33	389	453	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence Send to blast
MKEGEEKMKS MNDNEDSNNN NNNNNNSWLG FSLSPHMKME VSSSDHPYNQ HHSHHSASNP 60 FYLSPHFNSN NTEIFYGIPD NSSLHHHSAA ASLSVMPLKS DGSLCIMEAL SRSQTEGMVP 120 SSSPKLEDFL GGATMGDRGG YFNQNAESES DREHSFDLLQ RPIRHNQQIL IQNSNQYYSG 180 LLPSSIGIGT CDPQILPPDD DGIPCFRNWV SRSHYSATHN TLEHHISGGD GGGGTLMNES 240 NGGGSASIGG MSCGELQSLS LSMSPGSQSS SFTTSGQISP TGGDGAAVET KKEAPENSAR 300 NNPFIVNPSI LLVKEPPNIV ASPGGYDMEE KAARAYDLAA LKYWGPSTHI NFPLDNYQTE 360 LEEMKNMSRQ EYVAHLRRKS SGFSRGASVF RGVTRHHQHG RWQARIGRVA GNKDLYLGTF 420 STQEEAAEAY DIAAIKFRGV NAVTNFDISR YDVEKIMASN TLLAGELARR NKDVEPSNDS 480 SIVPYDSSVV SNNNGGIGIG MEINPDNTAN GNANDWKMAL YQNPSHHQQQ AAAAACVADS 540 LDNHHSKSMA MSGSYRNASF SMALQDLIGI ESLSANTHGI EDDVSKQVTH FSNSSSLVTS 600 LSSSREGSPD KTNVSMTFGK APPIMASKLI GATNGVGVGS WYPSPQQLRP TAAAISMAHL 660 PVFATWNDT*

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence Send to blast

MKEGEEKMKS MNDNEDSNNN NNNNNNSWLG FSLSPHMKME VSSSDHPYNQ HHSHHSASNP  60
FYLSPHFNSN NTEIFYGIPD NSSLHHHSAA ASLSVMPLKS DGSLCIMEAL SRSQTEGMVP  120
SSSPKLEDFL GGATMGDRGG YFNQNAESES DREHSFDLLQ RPIRHNQQIL IQNSNQYYSG  180
LLPSSIGIGT CDPQILPPDD DGIPCFRNWV SRSHYSATHN TLEHHISGGD GGGGTLMNES  240
NGGGSASIGG MSCGELQSLS LSMSPGSQSS SFTTSGQISP TGGDGAAVET KKEAPENSAR  300
NNPFIVNPSI LLVKEPPNIV ASPGGYDMEE KAARAYDLAA LKYWGPSTHI NFPLDNYQTE  360
LEEMKNMSRQ EYVAHLRRKS SGFSRGASVF RGVTRHHQHG RWQARIGRVA GNKDLYLGTF  420
STQEEAAEAY DIAAIKFRGV NAVTNFDISR YDVEKIMASN TLLAGELARR NKDVEPSNDS  480
SIVPYDSSVV SNNNGGIGIG MEINPDNTAN GNANDWKMAL YQNPSHHQQQ AAAAACVADS  540
LDNHHSKSMA MSGSYRNASF SMALQDLIGI ESLSANTHGI EDDVSKQVTH FSNSSSLVTS  600
LSSSREGSPD KTNVSMTFGK APPIMASKLI GATNGVGVGS WYPSPQQLRP TAAAISMAHL  660
PVFATWNDT*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269\|PubMed:21481033}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin. {ECO:0000269\|PubMed:21481033}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	0.0	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008444521.2	0.0	PREDICTED: LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor ANT
Swissprot	Q84Z02	1e-107	CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBL	A0A1S3BAK2	0.0	A0A1S3BAK2_CUCME; LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor ANT
STRING	XP_008444521.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF916	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	3e-85	AP2 family protein

Publications ? help Back to Top
Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Li P,Xue H Structural characterization and expression pattern analysis of the rice PLT gene family. Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97 [PMID:21807632]