PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C010692P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 360aa MW: 40345.2 Da PI: 6.6786 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.5e-19 | 70 | 119 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa+a++ a+++++g MELO3C010692P1 70 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAARAYDCAARSMRG 119 59*******.**********93....35999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.77E-21 | 70 | 127 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-33 | 70 | 133 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-12 | 70 | 119 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.36E-31 | 70 | 126 | No hit | No description |
PROSITE profile | PS51032 | 22.84 | 70 | 127 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-30 | 70 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-10 | 71 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-10 | 93 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MEADSFRRVP IDNNNTSSNP FLDYQMKCNA TTPTTPTATT TTTTTTTTTT TSSSLKRTLR 60 DHNSSSGTMR YRGVRRRPWG RYAAEIRDPQ SKERRWLGTF DTAEEAARAY DCAARSMRGL 120 KARTNFVYPS SPPAPHSLSS DDYLIPRFNF PPKHSLPRLN SSNWPIFSTP NRGPDFLWSG 180 HAQRINTASP TLDMLLLRDF LNFPSSNYNH SSKPSYPINT TTTTTTNNNN SSTTKITPPP 240 PPENYSSEFL PKDSPDSGLL EEVIHGFFPK SHDSNNINNS DDYFNNNDEN KNANLSGHNL 300 DLLDYQLADE NFNNNNTALI NQDAPDHGRL FGDAHNLILD DIFQCPELLN PFPSKLQNA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-20 | 70 | 126 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 0.0 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008444372.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR1 | ||||
TrEMBL | A0A1S3BAY0 | 0.0 | A0A1S3BAY0_CUCME; ethylene-responsive transcription factor ESR1 | ||||
STRING | XP_008444372.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4100 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12980.1 | 2e-16 | ERF family protein |