PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010640P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 323aa    MW: 36513.6 Da    PI: 7.478
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010640P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.4e-12186211126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd CkF+H+
  MELO3C010640P1 186 YQPDICKDYKETGYCGYGDACKFMHD 211
                     67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.4E-9184216IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577185213IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7185212IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-10186211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-12186216IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.7E-14245310IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.3E-9262304No hitNo description
SuperFamilySSF578505.71E-14262306No hitNo description
SMARTSM001841.2E-5263300IPR001841Zinc finger, RING-type
CDDcd001621.85E-9263304No hitNo description
PROSITE profilePS5008911.014263301IPR001841Zinc finger, RING-type
PROSITE patternPS005180278287IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MTDTGDTQPS EQVCSFFRKP TKNKNIRKRT VDEDEEEDSK AETSFLLNQK KAPKTESKLY  60
FSSGPSKNSL SNESNVEPNK PIFQFESSKE IQVHHDSRAT ATLETETDFS RDARAIRERV  120
LKQAEEALKG KGKSSGGEKL YKGVNAYVDY KAGFRREHTI SSEKAGGAHG PLRASAHIRA  180
SARFDYQPDI CKDYKETGYC GYGDACKFMH DRGDYKSGWQ LEKEWEEVEK ARKRKLAMKS  240
DDGDEDSSEQ SDEDEEGALP FACFICREPF VDPVVTKCGH YFCEHCALKH HAKNKKCFVC  300
NQPTLGIFNT AHEIRKKMAQ SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M6e-6296318113317RING finger protein 113A
5z58_M6e-6296318113317RING finger protein 113A
6ff4_t6e-6296318113317RING finger protein 113A
6ff7_t6e-6296318113317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818160.0LN681816.1 Cucumis melo genomic scaffold, anchoredscaffold01598.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466746.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_008466747.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-166C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1S3CS030.0A0A1S3CS03_CUCME; zinc finger CCCH domain-containing protein 1
STRINGXP_008466746.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-159C3H family protein