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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C010632P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 295aa MW: 33493.8 Da PI: 6.7416 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.6 | 2.1e-52 | 8 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelv++yL+++++++++ + +i+e+d+yk++PwdLp+ + ++ekewyfFs+r++ky++g+r+nra+ sgyWkatg dk++ + MELO3C010632P1 8 LPPGFRFHPTDEELVMHYLCRRCASQPIAV-PIIAEIDLYKFDPWDLPELALHGEKEWYFFSPRERKYPNGSRPNRAAGSGYWKATGADKPIGH- 100 79**************************99.88***************76667899************************************99. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 + vg+kk Lvfy g+ap+gekt+W+mheyrl MELO3C010632P1 101 -PKPVGIKKALVFYAGKAPRGEKTNWIMHEYRL 132 .789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.29E-62 | 4 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.773 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-27 | 9 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MTTHLTHLPP GFRFHPTDEE LVMHYLCRRC ASQPIAVPII AEIDLYKFDP WDLPELALHG 60 EKEWYFFSPR ERKYPNGSRP NRAAGSGYWK ATGADKPIGH PKPVGIKKAL VFYAGKAPRG 120 EKTNWIMHEY RLADVDRSAR NKNNLKLDDW VLCRIYNKKG VIEKRCQMAI SRNTKGLEDV 180 EEEKPKIFTS GGGGADVLMA SVTASVGDYV HFETSDSIPR LHTDSSGSEQ VVSPELTTGE 240 VESERKWKEM ENAFNSGYNY IDESSLEHEF ATQFHSGNQM SPLQDMFMYL QKPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-79 | 7 | 164 | 14 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681816 | 0.0 | LN681816.1 Cucumis melo genomic scaffold, anchoredscaffold01598. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008466736.1 | 0.0 | PREDICTED: NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-136 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A1S3CRZ3 | 0.0 | A0A1S3CRZ3_CUCME; NAC domain-containing protein 2 | ||||
STRING | XP_008466736.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-138 | NAC family protein |