PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009889P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family AP2
Protein Properties Length: 375aa    MW: 43151 Da    PI: 6.8438
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009889P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2361.8e-1167123155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV++++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a++k++g
  MELO3C009889P1  67 SRFRGVSRHRWTGRFEAHLWDkLSWNMtqKKKGKQ-GAYDEEESAARAYDLAALKYWG 123
                     789******************88888784446666.9******************987 PP
2AP243.11.1e-13155200755
             AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     r+++ +grW+A+I  ++    +k+ +lg++ t eeAa+a++ a+ +++g
  MELO3C009889P1 155 RRHHHNGRWEARIGRVYG---NKYLYLGTYSTQEEAARAYDMAAIEYRG 200
                     89999********99654...4*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.01E-1767133No hitNo description
PfamPF008471.2E-867123IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-1467133IPR016177DNA-binding domain
PROSITE profilePS5103218.08368131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-1268132IPR001471AP2/ERF domain
SMARTSM003805.1E-1868137IPR001471AP2/ERF domain
PRINTSPR003675.1E-56980IPR001471AP2/ERF domain
PROSITE profilePS5103216.515149208IPR001471AP2/ERF domain
PfamPF008472.0E-9155200IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-15156210IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-15156208IPR001471AP2/ERF domain
CDDcd000187.14E-22156210No hitNo description
SMARTSM003805.5E-21156214IPR001471AP2/ERF domain
PRINTSPR003675.1E-5190210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEAAALVLKN EDNLRICWRE EEAQTQPIRR VKRRRRDPAA AADQTNKQQS PKQHSDQAPT  60
TTMKRSSRFR GVSRHRWTGR FEAHLWDKLS WNMTQKKKGK QGAYDEEESA ARAYDLAALK  120
YWGVTTITNF PISEYEKEIE IMQTMTKEEY LASLRRHHHN GRWEARIGRV YGNKYLYLGT  180
YSTQEEAARA YDMAAIEYRG INAVTNFDWS NYMAWLKPPP PPSTVPNEAH FPSDPHKELC  240
NSSSIPADET SLFKNHHYDI DSFHSLQKQE LLESCNTPLN AYARSSSASA LDLLLRSSFF  300
KKLVETNSNL SVDEADNGDE AKTRVQLDSV FDEFEDVFCD RLTDVPLVCS SNKELQESEL  360
HSYFNGTFHR FKAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12836RRVKRRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443427.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
RefseqXP_008443428.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
TrEMBLA0A1S3B8R20.0A0A1S3B8R2_CUCME; AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
TrEMBLA0A1S3B8S90.0A0A1S3B8S9_CUCME; AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
STRINGXP_008443427.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.11e-73AP2 family protein