PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

MELO3C009542P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TALE

Protein Properties

Length: 714aa MW: 78205.6 Da PI: 7.3319

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C009542P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.2	1.5e-09	401	438	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + MELO3C009542P1 401 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 438 664459******************************88 PP
2	BELL	124	6.1e-40	265	336	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+s+leeV++rY+qy++q+q+vissFe++ag gsa+ Yt+lAl++iS++FrcLkdai++qi MELO3C009542P1 265 ERQEIQMKKAKLISMLEEVEQRYRQYHHQMQIVISSFEQAAGAGSARTYTALALQTISKQFRCLKDAITGQI 336 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	5.1E-63	188	334	IPR006563	POX domain
Pfam	PF07526	4.7E-49	193	333	IPR006563	POX domain
PROSITE profile	PS50071	12.163	379	442	IPR001356	Homeobox domain
SMART	SM00389	6.4E-9	382	446	IPR001356	Homeobox domain
CDD	cd00086	2.48E-11	382	443	No hit	No description
SuperFamily	SSF46689	4.71E-17	383	449	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.2E-29	385	449	IPR009057	Homeodomain-like
Pfam	PF05920	3.0E-18	399	438	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009610	Biological Process	response to symbiotic fungus
GO:0009737	Biological Process	response to abscisic acid
GO:0010197	Biological Process	polar nucleus fusion
GO:0010201	Biological Process	response to continuous far red light stimulus by the high-irradiance response system
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence Send to blast
MATYLHGNSD QFQSSDGGLQ TLVLMNPTYV QFSDTPPPPP PPPSHPNLVF FNSPTSAANT 60 FTALTQAPPS SHTQQFVGIP LQTTSAASPT SQDHNSHPLN PHHDISALHG FVPRLQHNIW 120 NQIDPSTAAR ESARAQQGLS LTLSSQHQQG FGSRDVQSQT QQAVSGEENM RISGGSSSSA 180 SGVTNGVAGI QGVLISSKYL KAAQELLDEV VNVTQNGIKS ESSPKKATGN QSKAIGDAAA 240 ATGTADGSLE GETDGKRAAE LTTSERQEIQ MKKAKLISML EEVEQRYRQY HHQMQIVISS 300 FEQAAGAGSA RTYTALALQT ISKQFRCLKD AITGQIRAAN KSLGEEECIG RKMEGSRLKF 360 VDHHLRQQRA LQQLGMIQHN AWRPQRGLPE RSVSILRAWL FEHFLHPYPK DSDKHMLAKQ 420 TGLTRSQVSN WFINARVRLW KPMVEEMYME EIKEQEQNGN GSTPTTEKSN DDSVSKSIAP 480 PPETKSPNSK QENSPNQNVH PSISISNSSG GNVRNSSGFT LIGTSSELDG ITQGSPKKQR 540 GPDILHSSNN NVPFINMDIK PREEEEHQNQ THNPHHNNHH HHLPMKFDED RQNRDGYSFL 600 GQPHFNIGGF GQYPIGEIAR FDADQFTPRF SGNNGVSLTL GLPHCENLSL NPATHQSFLP 660 NQSIHLGRRT EIGKPTDFSA INASTAHSST AFDTINIQNG KRFAAQLLPD FVA*

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence Send to blast

MATYLHGNSD QFQSSDGGLQ TLVLMNPTYV QFSDTPPPPP PPPSHPNLVF FNSPTSAANT  60
FTALTQAPPS SHTQQFVGIP LQTTSAASPT SQDHNSHPLN PHHDISALHG FVPRLQHNIW  120
NQIDPSTAAR ESARAQQGLS LTLSSQHQQG FGSRDVQSQT QQAVSGEENM RISGGSSSSA  180
SGVTNGVAGI QGVLISSKYL KAAQELLDEV VNVTQNGIKS ESSPKKATGN QSKAIGDAAA  240
ATGTADGSLE GETDGKRAAE LTTSERQEIQ MKKAKLISML EEVEQRYRQY HHQMQIVISS  300
FEQAAGAGSA RTYTALALQT ISKQFRCLKD AITGQIRAAN KSLGEEECIG RKMEGSRLKF  360
VDHHLRQQRA LQQLGMIQHN AWRPQRGLPE RSVSILRAWL FEHFLHPYPK DSDKHMLAKQ  420
TGLTRSQVSN WFINARVRLW KPMVEEMYME EIKEQEQNGN GSTPTTEKSN DDSVSKSIAP  480
PPETKSPNSK QENSPNQNVH PSISISNSSG GNVRNSSGFT LIGTSSELDG ITQGSPKKQR  540
GPDILHSSNN NVPFINMDIK PREEEEHQNQ THNPHHNNHH HHLPMKFDED RQNRDGYSFL  600
GQPHFNIGGF GQYPIGEIAR FDADQFTPRF SGNNGVSLTL GLPHCENLSL NPATHQSFLP  660
NQSIHLGRRT EIGKPTDFSA INASTAHSST AFDTINIQNG KRFAAQLLPD FVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	5e-16	388	446	5	63	Homeobox protein Meis2
3k2a_B	5e-16	388	446	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008442920.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	0.0	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A1S3B6D1	0.0	A0A1S3B6D1_CUCME; BEL1-like homeodomain protein 1
STRING	XP_008442920.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1627	34	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-171	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]