![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C009253P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 754aa MW: 84940.2 Da PI: 5.8426 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 386.6 | 2.9e-118 | 378 | 749 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+av+++d+++a++lL++++++asp gd qRla++f+ +L+arla+++s++yk l ++ts +++l+a++l+ ++P+ k+s+ MELO3C009253P1 378 LRTLLISCAQAVAADDHRNASELLKQVRQHASPFGDGSQRLASCFADGLEARLAGTGSQIYKGLINKRTS---AADVLKAYHLYLAACPFRKISN 469 6789************************************************************888888...89******************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 +t N++I+ a+e+++r+H+iDf+i +G+QWp+L+q L+ R++gpp+lRiTg++ p++g +e++eetg+rLa +Ae+++vpfe+n+ +ak++e+ MELO3C009253P1 470 FTSNRTIMVAAESATRLHVIDFGILYGFQWPTLIQRLSWRKGGPPKLRITGIEFPQPGfrPAERVEETGRRLAAYAESFNVPFEYNA-IAKKWET 563 *********************************************************9*****************************.7****** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+L+++++E l+Vn+ ++ ++lldesvs +s+r++vLklv ++sP++++ + +n++ F++rf eal ++sa+fd+le+ +pre+ er+ MELO3C009253P1 564 VTVEDLNIDQDEFLVVNCLYRAKNLLDESVSADSARNTVLKLVHKISPNLFISGIVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDYERM 658 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Ere++gre+ nv+aceg er+er et+++W+ r+++aGF ++p+ ++ + a +r + + + ++e+s +l++gWk+r ++++S W+ MELO3C009253P1 659 LLEREIFGREALNVIACEGWERVERPETYKQWQFRIMRAGFMQLPIAPEIFERAVEKVRSSYHRDFLIDEDSRWLLQGWKGRIIYAISTWK 749 **************************************************************999*************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.259 | 352 | 729 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-115 | 378 | 749 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 754 aa Download sequence Send to blast |
MTPDRELRKS GRYIDNRPFG IQAEEGTHGR PRFQNTIFSH NFQEFDCLLP NPSPSNVASS 60 SSIRTSSSND ASHEEDYLED CDFSDAVLTF INQILMEEDM EDKTCMLQDS LDLQAAEKSF 120 YEVLGKKYPP SPEVNTSLAN QYTDSLNEEL CGDSSNYLSN YGSTSNHGDD DPQTLSDVFQ 180 IRSALGDTIS PSSNSSSNSI ISGGDGWVDF SNNTIQVPEP NNRSQSIWQF QKGFEEASKF 240 LPGGNKLRLD FEVNGSATQG PDEGTSQIYL KAARKDQRNV LSLESRGRKN PHDENGDLEE 300 ERSSKQAAVF AESPLRSKMF DIVLLCSAGE GHERLVSFRQ ELHNAKIKSM LQSGQLKVSN 360 GGRGRRKKQS AKKEVVDLRT LLISCAQAVA ADDHRNASEL LKQVRQHASP FGDGSQRLAS 420 CFADGLEARL AGTGSQIYKG LINKRTSAAD VLKAYHLYLA ACPFRKISNF TSNRTIMVAA 480 ESATRLHVID FGILYGFQWP TLIQRLSWRK GGPPKLRITG IEFPQPGFRP AERVEETGRR 540 LAAYAESFNV PFEYNAIAKK WETVTVEDLN IDQDEFLVVN CLYRAKNLLD ESVSADSARN 600 TVLKLVHKIS PNLFISGIVN GAYNAPFFVT RFREALFHFS AIFDMLETVV PREDYERMLL 660 EREIFGREAL NVIACEGWER VERPETYKQW QFRIMRAGFM QLPIAPEIFE RAVEKVRSSY 720 HRDFLIDEDS RWLLQGWKGR IIYAISTWKP SVE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-48 | 367 | 750 | 8 | 380 | Protein SCARECROW |
5b3h_A | 3e-48 | 367 | 750 | 7 | 379 | Protein SCARECROW |
5b3h_D | 3e-48 | 367 | 750 | 7 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008442537.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Refseq | XP_008442538.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A1S3B5F6 | 0.0 | A0A1S3B5F6_CUCME; scarecrow-like protein 9 | ||||
STRING | XP_008442537.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |