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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C009101P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 895aa MW: 99073.8 Da PI: 6.5003 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.2 | 1.3e-17 | 316 | 415 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd+++ grlv+pk +ae++ ++++e+ ++++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ MELO3C009101P1 316 FEKMLSASDAGRIGRLVVPKACAEAYfpPISQPEGLPIRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 408 89**************************555566778***************9989999999***9.********************876.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 l +++++ MELO3C009101P1 409 LIMGFRK 415 7777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 3.2E-4 | 4 | 42 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene3D | G3DSA:2.40.330.10 | 3.6E-29 | 307 | 420 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.36E-19 | 313 | 415 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.82E-22 | 314 | 415 | No hit | No description |
PROSITE profile | PS50863 | 11.194 | 316 | 417 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-15 | 316 | 415 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-19 | 316 | 417 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.918 | 580 | 630 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.0E-10 | 585 | 627 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 895 aa Download sequence Send to blast |
MALRTCMNIS CRASSSTEWR KGWALRSGDF ATLCDKCGSA YDQSIFCDIF HLKDSGWREC 60 TSCGKHLHCG CIASKFLMEL HDSGGVNCIS CAKNLGLHTT STSEKLNGLG TSQVQTSGDL 120 QSFLVEDGNN DRITLIQSRN KTEGNELRQS HLSPSNNKNV SLVQMKHEEN CPSVRDVGYV 180 CSSESTQVMN GLNEFAKQEI CKGDSGTKLT YDSLALGCGN SNPLPGVSID EKEASKPSSP 240 LLLGSRSRHL IPKPARSVFN VGLESNASMV SQVRVARPPA EGRGRNQLLP RYWPKITDQE 300 LQQISGASNS TVVPLFEKML SASDAGRIGR LVVPKACAEA YFPPISQPEG LPIRIQDVKG 360 KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRMDPEGKLI MGFRKASSSS 420 IMQDSHPSAL STSGHSSEFF SSVFENLPIL SGHSSLLQSL KGNMDPQLNL LPGYFNQPGN 480 DMNWQKAEKQ DDQSRECLLL SSMMVPERKR TRNIGSKSKR LHIDCQDALE LRLTWEEVQD 540 LLCPPPTVKP SKFVVEDHEF EEYEEPPVFG KMSIFVVHST RGQEQWAQCD DCSKWRRLPI 600 DVLLPSKWTC LENIWDQSRS SCSTLEELTT REMENILRLN KEFKRQRTLA FSGPIQDHES 660 CGLDALASAA TLGDNASDPG TASVATTTKH PRHRPGCSCI VCIQPPSGKG KHKPTCMCNV 720 CMTVKRRFKT LMMRKKKRQS EREAEIAQKN QLKWSSREES ELDDTSRHAS LNLDPSANEA 780 QLMTNEPRSQ SNLVETCKDQ LDLNCQPDQE NEVDGVNRVS MMSLVQIASL PLETYLKQNG 840 LTSLLPDLQV SSASHAPAQG TNEMEGAVND DGCFASAAQD QESEGEQICG KDQS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-68 | 294 | 423 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 724 | 735 | KRRFKTLMMRKK |
2 | 724 | 737 | KRRFKTLMMRKKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008442317.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL2 | ||||
Refseq | XP_008442318.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL2 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A1S3B663 | 0.0 | A0A1S3B663_CUCME; B3 domain-containing transcription repressor VAL2 | ||||
STRING | XP_008442317.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11018 | 32 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Publications ? help Back to Top | |||
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