PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C008534P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 147aa MW: 17377.9 Da PI: 9.9729 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.7 | 1.4e-50 | 10 | 137 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 GfrFhPtdeelv +yLk+kv+++++++ e i+++diyk++PwdLpk + ++ekewyf+++rd+ky+++ r+nr+t+ g+Wkatg+d++++s+ MELO3C008534P1 10 IGFRFHPTDEELVGFYLKRKVQNNSIST-ELIRQLDIYKYDPWDLPKLAWTGEKEWYFYCQRDRKYRNSARPNRVTSVGFWKATGTDRPIYSNsk 103 7*************************99.89***************8777899***************************************854 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+ +glkk+Lvfy+gra k+ ktdW+mhe+rl MELO3C008534P1 104 sKSIIIGLKKSLVFYTGRACKAIKTDWMMHEFRL 137 44455***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-53 | 6 | 142 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.394 | 8 | 146 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-26 | 10 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MEQERNNETI GFRFHPTDEE LVGFYLKRKV QNNSISTELI RQLDIYKYDP WDLPKLAWTG 60 EKEWYFYCQR DRKYRNSARP NRVTSVGFWK ATGTDRPIYS NSKSKSIIIG LKKSLVFYTG 120 RACKAIKTDW MMHEFRLPHS PPNVCT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-48 | 1 | 137 | 3 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681846 | 1e-154 | LN681846.1 Cucumis melo genomic scaffold, anchoredscaffold00009. | |||
GenBank | LN713259 | 1e-154 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008441931.2 | 4e-96 | PREDICTED: protein FEZ-like | ||||
Swissprot | Q9ZVH0 | 4e-72 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A1S3B423 | 1e-94 | A0A1S3B423_CUCME; protein FEZ-like | ||||
STRING | XP_008441931.1 | 9e-96 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2013 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-64 | NAC family protein |
Publications ? help Back to Top | |||
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