PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C008297P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-X1
Protein Properties Length: 871aa    MW: 97465.2 Da    PI: 8.4407
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C008297P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X127.19e-09236254119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+HkC ++CHeG CppC+
  MELO3C008297P1 236 CGRHKCAEICHEGSCPPCR 254
                     ******************7 PP
2zf-NF-X116.22.4e-05396413118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H C + C+ G+CppC
  MELO3C008297P1 396 CGRHACRRRCCDGDCPPC 413
                     ****************** PP
3zf-NF-X116.91.4e-05417441119
        zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                     CG      +HkC ++CH+GpC pCp
  MELO3C008297P1 417 CGrrlrckNHKCPSPCHRGPCAPCP 441
                     777777779***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578509.18E-569147No hitNo description
PROSITE patternPS01359071137IPR019786Zinc finger, PHD-type, conserved site
CDDcd060089.46E-7172220No hitNo description
PfamPF014220.07184201IPR000967Zinc finger, NF-X1-type
SMARTSM004380.072184202IPR000967Zinc finger, NF-X1-type
CDDcd060081.34E-9226274No hitNo description
PfamPF014222.4E-6236254IPR000967Zinc finger, NF-X1-type
SMARTSM004383.8E-5236255IPR000967Zinc finger, NF-X1-type
CDDcd060081.46E-7279326No hitNo description
SMARTSM004380.026289308IPR000967Zinc finger, NF-X1-type
PfamPF014221291307IPR000967Zinc finger, NF-X1-type
CDDcd060081.16E-9333382No hitNo description
PfamPF014220.0054343362IPR000967Zinc finger, NF-X1-type
SMARTSM004380.22343363IPR000967Zinc finger, NF-X1-type
CDDcd060083.46E-8386434No hitNo description
PfamPF014220.0013396413IPR000967Zinc finger, NF-X1-type
SMARTSM004380.021396415IPR000967Zinc finger, NF-X1-type
CDDcd060087.08E-11413461No hitNo description
PfamPF014220.0027417441IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0069423442IPR000967Zinc finger, NF-X1-type
SMARTSM0043852480501IPR000967Zinc finger, NF-X1-type
PfamPF014224.7490500IPR000967Zinc finger, NF-X1-type
PfamPF0142222509518IPR000967Zinc finger, NF-X1-type
SMARTSM00438140509554IPR000967Zinc finger, NF-X1-type
PfamPF0142217591601IPR000967Zinc finger, NF-X1-type
SMARTSM0043817591621IPR000967Zinc finger, NF-X1-type
SMARTSM004380.021634652IPR000967Zinc finger, NF-X1-type
PfamPF014220.14636651IPR000967Zinc finger, NF-X1-type
SMARTSM004385.4697718IPR000967Zinc finger, NF-X1-type
PfamPF014221.8699711IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MISTHDHRRT TSDSDSNSDD DNGGSESLRH LDLSDSIFKA YFEFTGRSTT TADLSKIQSF  60
LTSSSSGALS CLICLERIRL SDPTWSCSSL CFAVFHLFCI QSWARQASDL AAARAATRSL  120
ISPDKPDEHS VWNCPKCRVE YSKSSIPKRY FCFCGKLENP PSDDPWILPH SCGEVCGRPL  180
KHNCGHHCLL LCHPGPCPSC PKIVQSSCYC GSVRDARRCG FKNFSCSNVC SKVLDCGRHK  240
CAEICHEGSC PPCRIQGVFK CQCGKTEEKR ECWDRSFRCE NECNKLLGCE KHSCNKGCHS  300
GECGQCPFKG KRTCPCGKKA YEGMPCDVAV PLCGATCDKM LACGLHRCPE RCHRGPCIGT  360
CRIVVFKSCR CGSLRKEIPC YQDLACERKC NRMRDCGRHA CRRRCCDGDC PPCAEICGRR  420
LRCKNHKCPS PCHRGPCAPC PVMVTISCAC GETHFEVPCG TEMDQKPPKC PKRCPVSPLC  480
SHRLSQKPHK CHYGACPPCR RICEEEYSCG HKCQLRCHGP KPPPKPEFTL KPKKKKAFHP  540
EEPAPGSPCP SCPELVWRPC VGQHIGADRM MVCSNSTQFS CDNLCGNPLP CTNHYCTKIC  600
HALKSQHPSP SLRDLSEPCE KCNLPCEKER KPKCAHPCPL KCHPGDCPPC KVLLKRSCHC  660
SSMVHVFECM YYISLSPEEQ MAVRSCSGPC HRKLPYCTHL CPETCHPGNC PSPENCSKKV  720
TVRCGCQTLK KEWLCKDVQA AYRKAERDPK DIPKTQFGYG LLPCGSDCKS KVQVVESELT  780
QRKPEVNGVK EVDTKKQASK RKRRRDSVHQ VKQISRLQKF FAALKYILLV IVVLIAVVVI  840
SLYGYKGLLW LNDWMNEVEN QRPRRRYPRI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1799804KRKRRR
2800804RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441467.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A1S3B3240.0A0A1S3B324_CUCME; NF-X1-type zinc finger protein NFXL2
STRINGXP_008441467.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors