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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C008189P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C2H2 | ||||||||
Protein Properties | Length: 250aa MW: 28324 Da PI: 8.4858 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00048 | 91 | 113 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H MELO3C008189P1 91 SCSVCPRVYPTSRLLSLHVSEaH 113 6*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.37 | 63 | 88 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 65 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.3 | 90 | 113 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 92 | 113 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 128 | 153 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 130 | 153 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEVESQSEFP CWKPFQRRFD PDSPFFASGN VEREILAKQV ALDLTEDEKL QLHNMAVDAS 60 SEIFCPIVGC GAHLKSLDDF EDHYNSRHAA SCSVCPRVYP TSRLLSLHVS EAHDSFFQAK 120 VARGYDMYEC LVEGCGLKFK SYKSRHQHLV DKHKFSASFE FFKKAHPSKK QRQKMYRKQA 180 IQGREETSRM EVENEIMDGL ISGVSKLSTS DSTPSSISFG RRHTRGLTFV PRAVQREKVS 240 DSSTAGTKR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 174 | KKQRQKM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681815 | 0.0 | LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008441334.1 | 0.0 | PREDICTED: zinc finger protein 511 | ||||
Refseq | XP_008441335.1 | 0.0 | PREDICTED: zinc finger protein 511 | ||||
TrEMBL | A0A1S3B3Y4 | 0.0 | A0A1S3B3Y4_CUCME; zinc finger protein 511 | ||||
STRING | XP_008441334.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9718 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14140.1 | 1e-100 | zinc ion binding;nucleic acid binding;zinc ion binding |