PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C008170P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 686aa    MW: 75401.9 Da    PI: 5.3528
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C008170P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.63.5e-1363236841374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv+lLl+cAeav+++d  la+++L +l+  ++p gd+mqR+a++fteAL arla  + +++k  ++ +  ++ns e l+++++ ++++P++kf+h
  MELO3C008170P1 323 LVHLLLACAEAVAKEDYMLARRYLHHLNRVVTPIGDSMQRVASCFTEALTARLAA-TLTTSKPSSSIPPFPQNSLEILKIYQIVYQACPYVKFAH 416
                     68****************************************************9.55555555555555677********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s ++++etg+ L+++A++l+vpfef++ + ++le+l+
  MELO3C008170P1 417 FTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGSPFLRITGVGP----SIDAVRETGRCLTELAHSLNVPFEFHA-IGEQLESLK 506
                     ******************************************************....9**************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +++++ + gEalaVn v +lhr++    sl +    +L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kv
  MELO3C008170P1 507 PNMFNRRVGEALAVNAVNRLHRVP--GKSLGN----LLGMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKV 595
                     ***********************9..455555....*********************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+ ++++ei+n+vaceg er+erhe+lekWr+ +e+ GFk v+ls++a++q k ll  ++ dgyr+ e++g+l+lgW+dr+L+++SaWr
  MELO3C008170P1 596 EQYIFAPEIRNIVACEGPERIERHERLEKWRKLMEAKGFKGVALSSNAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRALIAASAWR 684
                     ****************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.259297664IPR005202Transcription factor GRAS
PfamPF035141.2E-133323684IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MINSLCGSIG SRKSTNTTTD QPSSTCTTKQ QHHLPHPTSP TDSVSAKTAP VSSSDHLEQT  60
ALTPPSLDFP APKFDIDGDI DIQSPDNSVW DSLFADQLDC DFMISSPARS LSSPQNLSFN  120
YYNYNYGQAM MQCSPPRSCS QVGASSSVQK GKGLSPLHKV FNSPSNQYMQ AIEGNNNSSN  180
SIQTIGELLE DYQEEGFETY HQNMSKISGI GESLQYYDIS TSSLPPIIFE DLALPNSSNI  240
ICGSNQESST VEREFYNQIG SSNITTASLP QQGDQGQENP PQLPPPSLPL LPPPKQPQNQ  300
LNHSLMAPVP VGSEQEQDSG LQLVHLLLAC AEAVAKEDYM LARRYLHHLN RVVTPIGDSM  360
QRVASCFTEA LTARLAATLT TSKPSSSIPP FPQNSLEILK IYQIVYQACP YVKFAHFTAN  420
QAIFEAFEAE ERVHVIDLDI LQGYQWPAFM QALAARPGGS PFLRITGVGP SIDAVRETGR  480
CLTELAHSLN VPFEFHAIGE QLESLKPNMF NRRVGEALAV NAVNRLHRVP GKSLGNLLGM  540
IRDQAPNIVT LVEQEASHNG PYFLGRFLEA LHYYSAIFDS LDATFPPDSA QRAKVEQYIF  600
APEIRNIVAC EGPERIERHE RLEKWRKLME AKGFKGVALS SNAVTQSKIL LGLYSCDGYR  660
LTEDKGCLLL GWQDRALIAA SAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-10033068325377Protein SCARECROW
5b3h_D1e-10033068325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441631.10.0PREDICTED: DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A1S3B4L50.0A0A1S3B4L5_CUCME; DELLA protein RGL1-like
STRINGXP_008441631.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-100RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]