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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C008036P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GRAS | ||||||||
Protein Properties | Length: 499aa MW: 56877 Da PI: 4.5155 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 241.2 | 4.5e-74 | 115 | 484 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 ++lLl++Aea++++++ l+++l+++l++l g +++++la +ft++L+ + ++ + ++l++ ++ + n ++++a+++++++sP++kf+ MELO3C008036P1 115 TDLLLAAAEAIEAQNHLLVSNLIEKLKNLlLYDMGsSSFNQLAWFFTQGLHYKTVD--N---NILAAHHQIQINNYNSMSAFQMLQQLSPYIKFA 204 689*************************9644445599***************999..4...444555555556899999*************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 h+taNqaIlea+ege+++HiiDfdi++G+QWp+L+ La++ e slR+T++++ ++++++ +e+tg+rL++fA+++++pf f+ + ++ +++ MELO3C008036P1 205 HFTANQAILEAAEGERMIHIIDFDIMEGIQWPPLMADLAAK-EHVCSLRLTAIVQDNENERKIIEQTGRRLSEFAKSVNLPFIFDQIGIEKADKF 298 ****************************************8.6679*********9999***************************977766666 PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.adhnse..........sFlerflealeyysalfdslea 273 ee++v gE+++ n++ h++l s + s+ ++L+ v +lsPk vv+ve+e + +++ sF+e f+ea++++sal dsl MELO3C008036P1 299 --EEIQVM-GETVIANCSGIFHHIL--SYENLSKFGTFLDGVSKLSPKCVVLVEEElFNVTKQlglggpqpimSFVEFFFEAFHHFSALSDSLLR 388 ..888765.9**************9..55555559*********************55557779999**************************55 PP GRAS 274 klpr..eseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365 ++ e+ +++++++ lg +i + v++ + +t +W + +++ G+k++p+s+++ +qak+l++ + +d + v++e+ sl l+Wk+r MELO3C008036P1 389 CFSGvyENGFKQVMDEF-LGTRILDSVTQFPCD-----KTHVSWGSGFDHlKGYKKIPFSSFNCSQAKYLISLFRGD-FWVQHEKCSLSLCWKSR 476 54431144666777776.**********99999.....77789*****9868***********************88.***************** PP GRAS 366 pLvsvSaW 373 pL +++ W MELO3C008036P1 477 PLCTATIW 484 ******** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 33.492 | 88 | 466 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-71 | 115 | 484 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MEFFTNYNYF SSPEAFFHTH EGNSCSSLSE NSSQNSFQEG SFLEYDDQSF LQFDPINYNP 60 EDLLAVTSID PQNNQELSDH SGHVDEEDHE EEQDESNNII FKGIQAELME EESLTDLLLA 120 AAEAIEAQNH LLVSNLIEKL KNLLLYDMGS SSFNQLAWFF TQGLHYKTVD NNILAAHHQI 180 QINNYNSMSA FQMLQQLSPY IKFAHFTANQ AILEAAEGER MIHIIDFDIM EGIQWPPLMA 240 DLAAKEHVCS LRLTAIVQDN ENERKIIEQT GRRLSEFAKS VNLPFIFDQI GIEKADKFEE 300 IQVMGETVIA NCSGIFHHIL SYENLSKFGT FLDGVSKLSP KCVVLVEEEL FNVTKQLGLG 360 GPQPIMSFVE FFFEAFHHFS ALSDSLLRCF SGVYENGFKQ VMDEFLGTRI LDSVTQFPCD 420 KTHVSWGSGF DHLKGYKKIP FSSFNCSQAK YLISLFRGDF WVQHEKCSLS LCWKSRPLCT 480 ATIWVPCVES WTKNMRQI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 6e-34 | 122 | 486 | 26 | 379 | Protein SCARECROW |
5b3h_D | 6e-34 | 122 | 486 | 26 | 379 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008441019.1 | 0.0 | PREDICTED: nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A1S3B384 | 0.0 | A0A1S3B384_CUCME; nodulation-signaling pathway 2 protein-like | ||||
STRING | XP_008441019.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13148 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 5e-40 | GRAS family protein |