PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C008036P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 499aa    MW: 56877 Da    PI: 4.5155
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C008036P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS241.24.5e-741154842373
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     ++lLl++Aea++++++ l+++l+++l++l     g +++++la +ft++L+ + ++  +   ++l++ ++ + n  ++++a+++++++sP++kf+
  MELO3C008036P1 115 TDLLLAAAEAIEAQNHLLVSNLIEKLKNLlLYDMGsSSFNQLAWFFTQGLHYKTVD--N---NILAAHHQIQINNYNSMSAFQMLQQLSPYIKFA 204
                     689*************************9644445599***************999..4...444555555556899999*************** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+taNqaIlea+ege+++HiiDfdi++G+QWp+L+  La++ e   slR+T++++ ++++++ +e+tg+rL++fA+++++pf f+ +  ++ +++
  MELO3C008036P1 205 HFTANQAILEAAEGERMIHIIDFDIMEGIQWPPLMADLAAK-EHVCSLRLTAIVQDNENERKIIEQTGRRLSEFAKSVNLPFIFDQIGIEKADKF 298
                     ****************************************8.6679*********9999***************************977766666 PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.adhnse..........sFlerflealeyysalfdslea 273
                       ee++v  gE+++ n++   h++l  s +  s+  ++L+ v +lsPk vv+ve+e  + +++          sF+e f+ea++++sal dsl  
  MELO3C008036P1 299 --EEIQVM-GETVIANCSGIFHHIL--SYENLSKFGTFLDGVSKLSPKCVVLVEEElFNVTKQlglggpqpimSFVEFFFEAFHHFSALSDSLLR 388
                     ..888765.9**************9..55555559*********************55557779999**************************55 PP

            GRAS 274 klpr..eseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                      ++   e+  +++++++ lg +i + v++   +     +t  +W + +++  G+k++p+s+++ +qak+l++ + +d + v++e+ sl l+Wk+r
  MELO3C008036P1 389 CFSGvyENGFKQVMDEF-LGTRILDSVTQFPCD-----KTHVSWGSGFDHlKGYKKIPFSSFNCSQAKYLISLFRGD-FWVQHEKCSLSLCWKSR 476
                     54431144666777776.**********99999.....77789*****9868***********************88.***************** PP

            GRAS 366 pLvsvSaW 373
                     pL +++ W
  MELO3C008036P1 477 PLCTATIW 484
                     ******** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.49288466IPR005202Transcription factor GRAS
PfamPF035141.5E-71115484IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MEFFTNYNYF SSPEAFFHTH EGNSCSSLSE NSSQNSFQEG SFLEYDDQSF LQFDPINYNP  60
EDLLAVTSID PQNNQELSDH SGHVDEEDHE EEQDESNNII FKGIQAELME EESLTDLLLA  120
AAEAIEAQNH LLVSNLIEKL KNLLLYDMGS SSFNQLAWFF TQGLHYKTVD NNILAAHHQI  180
QINNYNSMSA FQMLQQLSPY IKFAHFTANQ AILEAAEGER MIHIIDFDIM EGIQWPPLMA  240
DLAAKEHVCS LRLTAIVQDN ENERKIIEQT GRRLSEFAKS VNLPFIFDQI GIEKADKFEE  300
IQVMGETVIA NCSGIFHHIL SYENLSKFGT FLDGVSKLSP KCVVLVEEEL FNVTKQLGLG  360
GPQPIMSFVE FFFEAFHHFS ALSDSLLRCF SGVYENGFKQ VMDEFLGTRI LDSVTQFPCD  420
KTHVSWGSGF DHLKGYKKIP FSSFNCSQAK YLISLFRGDF WVQHEKCSLS LCWKSRPLCT  480
ATIWVPCVES WTKNMRQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-3412248626379Protein SCARECROW
5b3h_D6e-3412248626379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441019.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A1S3B3840.0A0A1S3B384_CUCME; nodulation-signaling pathway 2 protein-like
STRINGXP_008441019.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131482130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-40GRAS family protein