PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

MELO3C007974P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Nin-like

Protein Properties

Length: 152aa MW: 17587.1 Da PI: 10.4286

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C007974P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.4	2.2e-26	28	77	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + i+l+dl+k+F pi++A+++L+v+lTvLKr+CR++GI+RWPhRkiks+ MELO3C007974P1 28 AGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSI 77 679*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.871	13	97	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-21	30	77	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MEESCDESGG ELIGIAEKKR RATSEHIAGI TLSDLAKNFG VPITEASRNL NVGLTVLKRK 60 CREFGIHRWP HRKIKSIDGL IRDLQEEAKH REEDHKALMA VTKRQMMLQN ERERIERTPF 120 RELESETKRF RQDVFRRKHK ARALESQSPS V*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-127	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-127	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011658076.1	1e-100	PREDICTED: protein RKD5-like isoform X1
Swissprot	O81791	2e-41	RKD5_ARATH; Protein RKD5
TrEMBL	A0A1S4DTD9	2e-98	A0A1S4DTD9_CUCME; protein RKD5
STRING	XP_008440912.1	1e-105	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	6e-44	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]