PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C007905P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 335aa MW: 37188.2 Da PI: 6.7257 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.9 | 1e-09 | 61 | 108 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N+ f eL l ++ +K++Ka+iL+ +++ +k+L MELO3C007905P1 61 IQKADREKLRRDRLNEHFLELGNTLDPD----RPKNDKATILTDTIQMLKDL 108 56789********************997....79****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.982 | 58 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-13 | 59 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.54E-7 | 59 | 113 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.2E-12 | 60 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-7 | 61 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-7 | 64 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MEQWKSGDFS QSSVPADLVP SSSLQPQPLA VSSTRHHSNQ LTESRLRTDA EVKDPIAVRK 60 IQKADREKLR RDRLNEHFLE LGNTLDPDRP KNDKATILTD TIQMLKDLTA EVHRLKADYE 120 ALSEESRELT QEKNELREEK ASLKSDIENL NAQYQQRLRV MFPWATMDPS VVMGPPYSYP 180 VPVPVPPGPI PMHPSLQPFT FFGNQNPGAI PNPCSTFVPY TAAANHPIDQ PSAQYASNSH 240 ISSKQDSRSK SSDQHRRSNV ERCDESTDVA TDLELKMPGS STQQDASSGS KKAKQSQRKE 300 KSVTDCSSSS RFSSSQVLQD SSSNSVGDIP KQNN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008440819.1 | 0.0 | PREDICTED: transcription factor bHLH121 | ||||
Swissprot | Q9LT23 | 6e-85 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | A0A1S3B2M7 | 0.0 | A0A1S3B2M7_CUCME; transcription factor bHLH121 | ||||
STRING | XP_008440819.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2282 | 33 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.1 | 2e-70 | bHLH family protein |
Publications ? help Back to Top | |||
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