PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MELO3C007886P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

DBB

Protein Properties

Length: 169aa MW: 18851.5 Da PI: 7.0307

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C007886P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.8	4.5e-08	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC+ C ++ H MELO3C007886P1 4 LCDSCESAAATLFCAADEAALCAVCDTKVH 33 6**************************998 PP
2	zf-B_box	27.4	6.9e-09	52	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 e ++C+ +e+ ++ ++Ce +++ lC +C + H g H+ MELO3C007886P1 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGgkrmHK 92 789***************************99966666776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.594	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	6.88E-7	3	45	No hit	No description
SMART	SM00336	2.2E-7	4	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.7E-6	4	42	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.674	51	97	IPR000315	B-box-type zinc finger
SMART	SM00336	4.1E-9	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.2E-6	52	85	IPR000315	B-box-type zinc finger
CDD	cd00021	7.48E-7	54	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MRILCDSCES AAATLFCAAD EAALCAVCDT KVHMCNKLAS RHVRVGLANP SEVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD VIVHVGGKRM HKRYLRLRQR VEFPGDKRND GKDQNVKPME 120 QVEKVKGQNE ERGEIEKHEE LRVSGVEKDY SNGDGHSKRP NKVIDLNM*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-109	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-109	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008440795.1	1e-122	PREDICTED: B-box zinc finger protein 19-like isoform X1
Swissprot	C0SVM5	1e-63	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	A0A1S3B2K6	1e-121	A0A1S3B2K6_CUCME; B-box zinc finger protein 19-like isoform X1
STRING	XP_008440793.1	1e-121	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24698	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	4e-66	DBB family protein