PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C007865P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 149aa MW: 16973 Da PI: 5.0591

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C007865P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.8	2.8e-14	30	88	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ rr+q+NReAArrsR RK++ ++ L++ + +L++ N +++ ++ + ++ +l++e+ MELO3C007865P1 30 RKRRRMQSNREAARRSRIRKQKHLDDLTDQISQLKNHNNEMATNMTLMMSLCISLEAEN 88 56799***********************************************9999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.2E-10	22	72	No hit	No description
SMART	SM00338	3.3E-14	26	90	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.979	28	77	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.27E-11	30	82	No hit	No description
Pfam	PF00170	3.7E-11	30	88	IPR004827	Basic-leucine zipper domain
CDD	cd14702	1.71E-15	31	81	No hit	No description
PROSITE pattern	PS00036	0	33	48	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MASSSGVSSG STNGGIRPSI GSEDDLEVER KRRRMQSNRE AARRSRIRKQ KHLDDLTDQI 60 SQLKNHNNEM ATNMTLMMSL CISLEAENSI LLAQTAELTN RLKSLNSIIK FIESMEVLEK 120 TFSYEIEDFN NGFEEEDYCN PWRYPFAN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	33	RKRRR
2	29	50	RKRRRMQSNREAARRSRIRKQK
3	42	49	RRSRIRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269\|PubMed:23461773}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-151	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-151	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008440768.1	1e-106	PREDICTED: bZIP transcription factor 53-like
Swissprot	C0Z2L5	9e-28	BZP44_ARATH; bZIP transcription factor 44
TrEMBL	A0A1S3B1Y1	1e-105	A0A1S3B1Y1_CUCME; bZIP transcription factor 53-like
STRING	XP_008440768.1	1e-106	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24697	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75390.1	3e-29	basic leucine-zipper 44

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]