PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007823P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 610aa    MW: 66737 Da    PI: 4.5787
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007823P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.15.1e-1092416092374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++L+ecA+ +s+++  +a ++L +l+e +s +gdp++R+a+yf+ AL +rl+    + ++ +++++t    s++ + ++k++++++P+ kf+hl
  MELO3C007823P1 241 LKTLIECAR-ISESEPDRAAQTLIKLKESSSDHGDPTERVAFYFMDALCRRLSL--RSDSRLISCEST----SDDFTLSYKALNDACPYSKFAHL 328
                     689*****9.77788999999999****************************98..333344455555....69999****************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taNqaIle++e+++++HiiDf+i qG+QW+aLlqaLa+R+ g+p  +Ri g+ +p  g   ++ l +tg+rLa+fA+ l+++fef++ + + +e+
  MELO3C007823P1 329 TANQAILESTENASKIHIIDFGIAQGVQWAALLQALATRSTGKPtGIRISGIPAPMLGncPATGLFATGNRLAEFAKLLELNFEFDP-ILTPIEE 422
                     ****************************************776659********9999999**************************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ ++++++++E+laVn++lql++llde+        +vL+l ksl+Pk+v++ e ea++n+  F++rf +al++ysa+f+sl+ klpr+s+er 
  MELO3C007823P1 423 LNESSFQMDTDETLAVNFMLQLYNLLDETPRAVL---NVLQLAKSLNPKIVTLGEYEASLNRVGFFNRFKNALRHYSAVFESLDPKLPRDSNERL 514
                     **************************99998888...9********************************************************* PP

            GRAS 284 kvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                      +E+ llgr+i  +v  e +   ++ r+e +e+W++ +e++GF +v+ls++a +qak ll k++ s +y++ e+s  ++ l W++ p+++vS+Wr
  MELO3C007823P1 515 HLEKLLLGRQIGGLVGPESSPgsKTVRMEDKEEWKKLMESSGFDSVNLSHYAKSQAKILLWKYDySSEYSLMESSPGFLsLAWNEVPIITVSSWR 609
                     ****************9998666899**************************************9999****99998888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.75214587IPR005202Transcription factor GRAS
PfamPF035141.8E-106241609IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MANMCADSGN LMAIAQQVMK QKQQQEQQQQ HPQHQPQQLT GPCTFGLNPW SASNHALSGA  60
PDLGFGLTGA GFPDPFQVQR VVDSGETSFQ FPNLEHHSPA FRFSDFDGGA AAEFDSDEWM  120
ESLMAGGDST DSSNLPSGCD AWQSNSDFAF YAADPFVPCP SRLTIPCSSP SDLNRVIFPD  180
PPKSEPAVEP PVVSWTGIPP ATLSAVVKDT QIPNPPLAVL KSEDNGGSSS SAETESTPPL  240
LKTLIECARI SESEPDRAAQ TLIKLKESSS DHGDPTERVA FYFMDALCRR LSLRSDSRLI  300
SCESTSDDFT LSYKALNDAC PYSKFAHLTA NQAILESTEN ASKIHIIDFG IAQGVQWAAL  360
LQALATRSTG KPTGIRISGI PAPMLGNCPA TGLFATGNRL AEFAKLLELN FEFDPILTPI  420
EELNESSFQM DTDETLAVNF MLQLYNLLDE TPRAVLNVLQ LAKSLNPKIV TLGEYEASLN  480
RVGFFNRFKN ALRHYSAVFE SLDPKLPRDS NERLHLEKLL LGRQIGGLVG PESSPGSKTV  540
RMEDKEEWKK LMESSGFDSV NLSHYAKSQA KILLWKYDYS SEYSLMESSP GFLSLAWNEV  600
PIITVSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1452396093375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440702.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A1S3B1Q80.0A0A1S3B1Q8_CUCME; scarecrow-like protein 4
STRINGXP_008440702.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein