PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007678P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 298aa    MW: 33485.7 Da    PI: 7.1536
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007678P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11114160455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++ ++f  L  l+P +      K++Ka+iL  A++++k+Lq
  MELO3C007678P1 114 EHVIAERKRREKLSQRFIALSALIPGL-----NKVDKASILGGAIRHVKELQ 160
                     599***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-9114160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-15114170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.27E-12115164No hitNo description
SuperFamilySSF474592.36E-15115178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-14116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDEFKIDPFE FSLDALQFDD LYELPVPPYA VEEKPAKQVK VEKEEEEQAG AGGINKCKTT  60
FVGNNYKGRD SSLSSSSRII SFENNWNHES VNNWNSNNGK RSCSMNRNAM NGREHVIAER  120
KRREKLSQRF IALSALIPGL NKVDKASILG GAIRHVKELQ ERLKGVEEQT TSKTSEPQVP  180
VVCVKRTTLQ PSSSDDDTSS SDENSFSGRL RSTPEIEARF LNNDVLIRIH CHKRKGCLSY  240
LLNRIQSLNN LTILNTCALP FSHSNLDITI VAQMDVGFHM TVEDVVKNLR QALLDFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123ERKRRE
2119124RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440466.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1S3B1720.0A0A1S3B172_CUCME; transcription factor bHLH18-like
STRINGXP_008440466.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2469233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-45bHLH family protein