PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007524P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 392aa    MW: 46098.5 Da    PI: 8.4181
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007524P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.6e-131811799
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
              B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
                    ++p+ f++++g+    s  ++le ++gr+W+v l+ ++  g+++l++GW +F +   L+ g  +vFkl +r  + +++v +f++
  MELO3C007524P1  1 MIPRMFIKDYGKF--LSNFVILELPDGREWKVGLT-WRDNGSVWLQEGWDKFSEHYCLEYGFLLVFKLLDRrGTSSFKVNIFDT 81
                    69********844..7889***************6.6666799************************7766588889**99997 PP
2B359.17.8e-192122901797
                     E--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     v+pk+fa+++ +++ +s  +++++e+g++W++ +++ +++++  ++++GW++Fv++n Lk gD+v F+++++++f l+ k++
  MELO3C007524P1 212 VIPKEFARKYLSDEVGS--ISIQTENGKKWSLLYRWnEGNDEVAYISRGWRDFVEENLLKPGDVVFFEVIKKDKF-LFTKLR 290
                     8*********8887886..9999*************55555559************************9997777.555554 PP
3B345.91e-14311389184
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     ffkv +++ +  ++ l +p  fa+eh +++    +l++++   ++Wev+l  +++ ++y l++GW++F ++n L++g +++F++
  MELO3C007524P1 311 FFKVQIHKKSYGNAALNIPLGFAKEHFSPEMHYAKLQVRN---KEWEVTL--KQYVNHYRLSAGWSKFYHENMLRDGNTCLFEM 389
                     89999999999***************88877777777766...*******..******************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.94E-15181IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.381182IPR003340B3 DNA binding domain
CDDcd100174.95E-14180No hitNo description
SMARTSM010190.014182IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-15282IPR015300DNA-binding pseudobarrel domain
PfamPF023627.5E-10281IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-18179292IPR015300DNA-binding pseudobarrel domain
CDDcd100174.26E-15180290No hitNo description
SMARTSM010199.1E-13205292IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-18212290IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-16212291IPR003340B3 DNA binding domain
PROSITE profilePS5086314.565212292IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-17305389IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-14305389IPR015300DNA-binding pseudobarrel domain
CDDcd100175.53E-9311390No hitNo description
PfamPF023625.9E-11311389IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111311391IPR003340B3 DNA binding domain
SMARTSM010190.02311391IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MIPRMFIKDY GKFLSNFVIL ELPDGREWKV GLTWRDNGSV WLQEGWDKFS EHYCLEYGFL  60
LVFKLLDRRG TSSFKVNIFD TTAMETQYSW NVNDFTEEFD SDSDASSESL RPHSKKRKKG  120
SLPRRFSKKT RQEDFFLIKT EPEEEEGCNI FSDIPKEEVE ISRRREELKN RGESNEKLGF  180
KVVMSESNVG GRFNLKRLKL CVCVFFLVLL EVIPKEFARK YLSDEVGSIS IQTENGKKWS  240
LLYRWNEGND EVAYISRGWR DFVEENLLKP GDVVFFEVIK KDKFLFTKLR ENITVPSSSP  300
KEKISSTTNP FFKVQIHKKS YGNAALNIPL GFAKEHFSPE MHYAKLQVRN KEWEVTLKQY  360
VNHYRLSAGW SKFYHENMLR DGNTCLFEMD Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109117LRPHSKKRK
2114118KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657840.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0A0KL640.0A0A0A0KL64_CUCSA; Uncharacterized protein
STRINGXP_008440223.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-13B3 family protein