PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007260P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HB-other
Protein Properties Length: 1754aa    MW: 198502 Da    PI: 4.8703
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007260P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.7e-193186257
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                     kR+  t+ qle+Le++++ + yps+++r+eL++klgLt+rq ++WF+ rR k+kk
  MELO3C007260P1 31 PKRQMKTPFQLETLEKAYALETYPSESTRAELSEKLGLTDRQLQMWFCHRRLKDKK 86
                    69****************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-181687IPR009057Homeodomain-like
SuperFamilySSF466891.67E-162187IPR009057Homeodomain-like
PROSITE profilePS5007116.6172787IPR001356Homeobox domain
SMARTSM003896.6E-182991IPR001356Homeobox domain
PfamPF000461.5E-163186IPR001356Homeobox domain
CDDcd000861.44E-143287No hitNo description
PROSITE profilePS5082717.259548607IPR018501DDT domain
SMARTSM005713.4E-22548607IPR018501DDT domain
PfamPF027916.8E-19549604IPR018501DDT domain
PfamPF050662.6E-15730797IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.1E-6938977IPR028942WHIM1 domain
PfamPF156131.8E-1111091179IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1754 aa     Download sequence    Send to blast
MEAAASDGEN HNLNNDNINK ISNSSEGLSK PKRQMKTPFQ LETLEKAYAL ETYPSESTRA  60
ELSEKLGLTD RQLQMWFCHR RLKDKKEPAK KPRKVLPAPP LALPDSPIDE LRVVAEPGSD  120
YASGSGSGSS PFGDVGLRNA VPRSVGDDMP MMRRYYETSR SAMELRAIAC VESQLGEPLR  180
EDGPILGIEF DPLPPDAFGA PIVAEQQKRS GHYGDKYEQR DAKSNKVTAR GFPEYPFMPD  240
QANIRADAYG PVSQLHYPDS LGEVSAARTP SFVHGHEQLN RSHNYHSQVS RVRHMSQQEK  300
QGVTISSPAE ENVFPPPRDS YPSIRMNSQF TEHTIVGQEN SYVLPDGHAF PNDVMIRMER  360
KRKSEEARLS KEAEAHEIRM RKELEKQDIL RKKNEERMRK EMEKQDRERR REEERLLREK  420
QREAERLKRE ERREHERREK FLQREYLRAE KRKQKEAIRK EKEAVRRKAA IEKATARRIA  480
RESMELIEDE QLELMELAAA NKGLSSILSL DHDTLQNLES FRDYLGAFPP KSVQLKKPFG  540
IQPWVNSEEN IGNLLMVWRF FITFSDVLEL WPFTLDEFVQ ALHDYDSRLL AEIHISLLRL  600
IVKDIEDVAR TPSAGMGMNQ NGVANSGGGH PQIVEGAYAW GFDICNWQKH LNPLTWPEIF  660
RQLALSAGHG PQLKKRSLAM SEMRSKDEAK CGEDVVSTLR NGSAAENAFA IMQEKGLLAP  720
RRSRHRLTPG TVKFAAFHVL SLEGSEGLTV LELAEKIQRS GLRDLSTSKT PEASISVALT  780
RDTKLFERIA PSTYRVRAPY RKDPDDAEEI LSVARKKIQV FQNGFLAGED ADDVERDEES  840
ECDDVDEDPE VDDIATTSLV NEDVNKGDVN LGVENENLCH DIAGNLQNDI TKDVLPFPLS  900
GSKDTKYLSI PTEQYAAVDE TAISDLDQEN MEIDESKEGE SWIQGLTEGE YHDLSVEERL  960
NALVVLTSIA NEGNSIRLVL EDRLEAANAV KKQMLTEAQI DKSRLKEEII TKSDFPIHIV  1020
SKVEIELNGS TMDGGQSPFP VADNKNNETT PSTAENLSSV PNERGTLVPD LFPGPDNFLA  1080
QQCGHASKRS RSQLKSYIAH RAEEMYTYRS LPLGRDRRRN RYWQFVASSS SNDPGSGRIF  1140
VEMYDGKWRL IDSEEGFDAL SLALDTRGIR ESHLRIMLQM IETSFKENVR RNLQCANEMV  1200
QSGITPKNEN DYSSSSPDCT TGFNSPSSTV CGLNLDTMVT SSSFRIELGR NENEKKTAFR  1260
RYQDLQRWML RECFSTSTLC AMKFGEKRCT SLFDICDSCL CLFDSQRSHC PSCHQTFGVG  1320
GNDINFLEHK RHCERERKSS PLDTHFLDAS LPLKSRLLKA FLAFIEVHVP LEAFQSIWTE  1380
HREEWGARMK LSSSIEELLQ ILTLFESVIK RDFLKSDFTT TDEHLSSCSI SGNAIRDPAD  1440
IGSVLTLPWI PRTSAAVGLR LCEVDASIYY IGCEKPEPDQ DKELGEHINF SSRYAQVKND  1500
ERTKLNDLDY DDLMKNENSA DPKGLRNSYK RGRGSRDYGR RRKWQKKVNG SRSGRVRQNV  1560
KSNEKMNQGQ GELGQGTQLM GIRGRRTVRK RRAEKSVPDE GLSGLVPSSS TQNIDESPKD  1620
YLGEWEDEKM DRFVDMEDEE NVMEDEENMM EDEENEENVN NVEQMDSDDG QEVGYEQGGW  1680
EFGFEGTSNR WNGDIGIGSD EDVDLSDYNG TEEGGNDDIE ELDVDSSEES DCSPNRIGNN  1740
GGGESAVSDD YSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17986RRLKDKKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439810.20.0PREDICTED: homeobox-DDT domain protein RLT1 isoform X1
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A1S3AZ780.0A0A1S3AZ78_CUCME; homeobox-DDT domain protein RLT1 isoform X1
STRINGXP_008439810.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1