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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C007260P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HB-other | ||||||||
Protein Properties | Length: 1754aa MW: 198502 Da PI: 4.8703 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.2 | 6.7e-19 | 31 | 86 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgLt+rq ++WF+ rR k+kk MELO3C007260P1 31 PKRQMKTPFQLETLEKAYALETYPSESTRAELSEKLGLTDRQLQMWFCHRRLKDKK 86 69****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-18 | 16 | 87 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.67E-16 | 21 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.617 | 27 | 87 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.6E-18 | 29 | 91 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.5E-16 | 31 | 86 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.44E-14 | 32 | 87 | No hit | No description |
PROSITE profile | PS50827 | 17.259 | 548 | 607 | IPR018501 | DDT domain |
SMART | SM00571 | 3.4E-22 | 548 | 607 | IPR018501 | DDT domain |
Pfam | PF02791 | 6.8E-19 | 549 | 604 | IPR018501 | DDT domain |
Pfam | PF05066 | 2.6E-15 | 730 | 797 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 1.1E-6 | 938 | 977 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 1.8E-11 | 1109 | 1179 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1754 aa Download sequence Send to blast |
MEAAASDGEN HNLNNDNINK ISNSSEGLSK PKRQMKTPFQ LETLEKAYAL ETYPSESTRA 60 ELSEKLGLTD RQLQMWFCHR RLKDKKEPAK KPRKVLPAPP LALPDSPIDE LRVVAEPGSD 120 YASGSGSGSS PFGDVGLRNA VPRSVGDDMP MMRRYYETSR SAMELRAIAC VESQLGEPLR 180 EDGPILGIEF DPLPPDAFGA PIVAEQQKRS GHYGDKYEQR DAKSNKVTAR GFPEYPFMPD 240 QANIRADAYG PVSQLHYPDS LGEVSAARTP SFVHGHEQLN RSHNYHSQVS RVRHMSQQEK 300 QGVTISSPAE ENVFPPPRDS YPSIRMNSQF TEHTIVGQEN SYVLPDGHAF PNDVMIRMER 360 KRKSEEARLS KEAEAHEIRM RKELEKQDIL RKKNEERMRK EMEKQDRERR REEERLLREK 420 QREAERLKRE ERREHERREK FLQREYLRAE KRKQKEAIRK EKEAVRRKAA IEKATARRIA 480 RESMELIEDE QLELMELAAA NKGLSSILSL DHDTLQNLES FRDYLGAFPP KSVQLKKPFG 540 IQPWVNSEEN IGNLLMVWRF FITFSDVLEL WPFTLDEFVQ ALHDYDSRLL AEIHISLLRL 600 IVKDIEDVAR TPSAGMGMNQ NGVANSGGGH PQIVEGAYAW GFDICNWQKH LNPLTWPEIF 660 RQLALSAGHG PQLKKRSLAM SEMRSKDEAK CGEDVVSTLR NGSAAENAFA IMQEKGLLAP 720 RRSRHRLTPG TVKFAAFHVL SLEGSEGLTV LELAEKIQRS GLRDLSTSKT PEASISVALT 780 RDTKLFERIA PSTYRVRAPY RKDPDDAEEI LSVARKKIQV FQNGFLAGED ADDVERDEES 840 ECDDVDEDPE VDDIATTSLV NEDVNKGDVN LGVENENLCH DIAGNLQNDI TKDVLPFPLS 900 GSKDTKYLSI PTEQYAAVDE TAISDLDQEN MEIDESKEGE SWIQGLTEGE YHDLSVEERL 960 NALVVLTSIA NEGNSIRLVL EDRLEAANAV KKQMLTEAQI DKSRLKEEII TKSDFPIHIV 1020 SKVEIELNGS TMDGGQSPFP VADNKNNETT PSTAENLSSV PNERGTLVPD LFPGPDNFLA 1080 QQCGHASKRS RSQLKSYIAH RAEEMYTYRS LPLGRDRRRN RYWQFVASSS SNDPGSGRIF 1140 VEMYDGKWRL IDSEEGFDAL SLALDTRGIR ESHLRIMLQM IETSFKENVR RNLQCANEMV 1200 QSGITPKNEN DYSSSSPDCT TGFNSPSSTV CGLNLDTMVT SSSFRIELGR NENEKKTAFR 1260 RYQDLQRWML RECFSTSTLC AMKFGEKRCT SLFDICDSCL CLFDSQRSHC PSCHQTFGVG 1320 GNDINFLEHK RHCERERKSS PLDTHFLDAS LPLKSRLLKA FLAFIEVHVP LEAFQSIWTE 1380 HREEWGARMK LSSSIEELLQ ILTLFESVIK RDFLKSDFTT TDEHLSSCSI SGNAIRDPAD 1440 IGSVLTLPWI PRTSAAVGLR LCEVDASIYY IGCEKPEPDQ DKELGEHINF SSRYAQVKND 1500 ERTKLNDLDY DDLMKNENSA DPKGLRNSYK RGRGSRDYGR RRKWQKKVNG SRSGRVRQNV 1560 KSNEKMNQGQ GELGQGTQLM GIRGRRTVRK RRAEKSVPDE GLSGLVPSSS TQNIDESPKD 1620 YLGEWEDEKM DRFVDMEDEE NVMEDEENMM EDEENEENVN NVEQMDSDDG QEVGYEQGGW 1680 EFGFEGTSNR WNGDIGIGSD EDVDLSDYNG TEEGGNDDIE ELDVDSSEES DCSPNRIGNN 1740 GGGESAVSDD YSD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 86 | RRLKDKKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008439810.2 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT1 isoform X1 | ||||
Swissprot | F4HY56 | 0.0 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A1S3AZ78 | 0.0 | A0A1S3AZ78_CUCME; homeobox-DDT domain protein RLT1 isoform X1 | ||||
STRING | XP_008439810.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2523 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |