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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C007251P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARF | ||||||||
Protein Properties | Length: 733aa MW: 79816.6 Da PI: 7.0597 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.5 | 5.9e-24 | 150 | 251 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ MELO3C007251P1 150 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyN-QQRPSQELVAKDLLGLKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGDD 241 99****************************963.3445679************************************************..3489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ MELO3C007251P1 242 GELRLGIRRA 251 999****996 PP | |||||||
2 | Auxin_resp | 106.9 | 2.2e-35 | 276 | 357 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s+ks F+v+YnPra++s+Fv +++k++k++++++svGmRf+++fet+d + rr +G ++gv d+d++rWp+S+WrsL MELO3C007251P1 276 VVNAISSKSSFSVCYNPRAASSQFVLPFHKFLKSINHSFSVGMRFRLSFETDDGADRRHTGHITGVGDVDSIRWPGSRWRSL 357 689******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.9E-39 | 145 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.15E-41 | 146 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.69E-22 | 148 | 250 | No hit | No description |
PROSITE profile | PS50863 | 13.253 | 150 | 252 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.2E-22 | 150 | 251 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-21 | 150 | 252 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.2E-31 | 277 | 357 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 733 aa Download sequence Send to blast |
MGALIDLNTT EEDESPSPAG SSVSSSSASA LTSSPSPSVT SSICLELWHA CAGPLTSLPK 60 KGSLVVYLPQ GHFEQMQEFP PTPYDLPPHI LCRVIDVQLH AEAGSDEVYA QVSLFPENEQ 120 MEHKMQEEMN NDSEEEDVEE GEKATTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD 180 YNQQRPSQEL VAKDLLGLKW KFRHIYRGQP RRHLLTTGWS AFVNKKRLVS GDAVLFLRGD 240 DGELRLGIRR AAQLKSGSAF SNICSQQLNS SSIMDVVNAI SSKSSFSVCY NPRAASSQFV 300 LPFHKFLKSI NHSFSVGMRF RLSFETDDGA DRRHTGHITG VGDVDSIRWP GSRWRSLMVR 360 WDDGETNRHG RVSPWEIEPS GSVSLSSNLV PPGLKRTRIG LSSTKLEFPV PNGIGASDFG 420 ESLRFQKVLQ GQEILGYSTP PDGDNNNCCP PEKRRLIPGL HGSGIALMRN GSRNPLINSE 480 TSSRGIVFDE SFQYHKVLQG QEIFPSPYYG RAVATNEVKA TGGCGPANGI RLPRTKDGWP 540 MAMQCENFLT RSSIPSVQVS SPSSVFMFQQ SMVPVQSFNS HDRGNFTEQR IMNKSTSHHS 600 GTTFMTDHSL NTEFIPQGTC PTSLGEQNQL GLSHPSTTTA SAAFTVSKDL PSTCKAGCRL 660 FGFSLTEEKN VGNTDDKGSP ATAPINAGTT TVLSNMGVQC SLKSPLMNKV VGSNCTKVSN 720 LSARAVEAIY FA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-112 | 35 | 386 | 11 | 361 | Auxin response factor 1 |
4ldy_B | 1e-112 | 35 | 386 | 11 | 361 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00021 | PBM | Transfer from AT2G33860 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU323410 | 0.0 | KU323410.1 UNVERIFIED: Trichosanthes dioica clone TdARF_8 auxin response factor 3-like mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016899372.1 | 0.0 | PREDICTED: auxin response factor 3 isoform X3 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A1S4DTP5 | 0.0 | A0A1S4DTP5_CUCME; Auxin response factor | ||||
STRING | XP_008439798.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4576 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 0.0 | ARF family protein |