PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C007210P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 115aa MW: 13167.7 Da PI: 10.7651

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C007210P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.1	4e-33	50	103	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+av++LGG+e+AtPk +l+lm+vkgL+++hvkSHLQ+YR+ MELO3C007210P1 50 PRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRS 103 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.825	46	106	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.1E-31	46	104	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.38E-16	48	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.2E-24	50	105	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-10	51	102	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MTIEEIEQNE ERKYENSSAN NNENNSNNNN NNNNNGRRTA VRQYVRSKVP RLRWTPELHL 60 NFVHAVQRLG GQERATPKLV LQLMNVKGLS IAHVKSHLQM YRSKKLDQSG QGTN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-21	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-21	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-21	51	105	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-21	51	105	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-21	51	105	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-21	51	105	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-21	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-21	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-21	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-21	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-21	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-21	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-120	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-120	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008439740.1	8e-74	PREDICTED: transcription repressor KAN1-like isoform X3
Swissprot	Q700D9	2e-32	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A1S3B068	2e-72	A0A1S3B068_CUCME; transcription repressor KAN1-like isoform X3
STRING	XP_008439737.1	7e-72	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3012	32	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-40	G2-like family protein