![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C006856P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 905aa MW: 101837 Da PI: 7.0088 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 27 | 1.2e-08 | 214 | 265 | 24 | 75 |
trihelix 24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 gk ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++++ e+ MELO3C006856P1 214 GKTRADKDREVAEYLQKHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQ 265 567888889*************************************996555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF56112 | 4.16E-14 | 739 | 885 | IPR011009 | Protein kinase-like domain |
Gene3D | G3DSA:1.10.510.10 | 5.0E-6 | 741 | 849 | No hit | No description |
CDD | cd00180 | 4.72E-11 | 746 | 886 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 905 aa Download sequence Send to blast |
MGEKGETPQQ QDHYDSSSPK DPLDDSLETR SHGGSHHHHG HHHHLHRRHQ HQHHDSSLIV 60 ATPFISTPLY LSTTATPTTT AFEAVNPKRT RYTAGQWKLL PSPTTSQPAI PVVGSDSSAS 120 PSQRRPGATS NVGPASSSDT TSSPSHSPLP ARSKGEGESQ NQAQYRKGKY VSPVWKPNEM 180 LWLARAWRVQ YQGGGSSNEI VGGTVVGQGG RGIGKTRADK DREVAEYLQK HGVNRDAKTA 240 GTKWDNMLGE FRKVYEWERG GEREQLVGKS YFRLSPYERK LHRLPASFDE QVFEELSQFM 300 GSKMRNKPTP ILPLTTSLPP PPPFRDHHNQ LPLSSRAKEV FGVDYGSVDA SCHRRIGKVR 360 MVWEESVSLW GEDQGVGGDQ EHRLGGRIRV EGDIFSLPEF VLNVANLRWF YSANTSWDYQ 420 DPTEYYVGCL RIPPTSLPSL SELSWHIQDP PSEELRFPIR KDAYAYLPQG KEVMFTTTTE 480 MLDCKSFIYE IICPIIRTNP CIATPSSRDS FISLWDDCIN RLVSEFCCME MQLIRKPSNP 540 PSSSSTTTDN LLDEWPNITG FIKKKFCLWR GEETDQIKDN GLNNNPSSSL VDKLLWTYLD 600 IPYVLGYYAI GYLVTFCALS RGQDNRIIRT DLYSLDLSSP SERLKALVPC YRIGGILTLL 660 AEQCNKLGVS SDFERIDVGN GIVVEMTPNL VTKFFSCRRK WTAVKEIYDF LDQRIPHSEY 720 IIGSIEKDLA LVFKPRVCKL RPTSYEQLIE ALKNVTKALV ALHDLCFMHR DICWEKVMKK 780 GRDHNDEDEN EEDEEMKRVK GEWILCGFEE AVGAPQIYPY TAASGRHAPE MGRGLHGVKV 840 DMWGVGYLIQ TCGLIGIPKM LMELQNRCMD QNPEHRPTAA DCYHHLLQLQ SSLSGAAGGS 900 GGLM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016898960.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484212 | ||||
TrEMBL | A0A1S4DTD2 | 0.0 | A0A1S4DTD2_CUCME; LOW QUALITY PROTEIN: uncharacterized protein LOC103484212 | ||||
STRING | XP_008439395.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11857 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33550.1 | 9e-07 | Trihelix family protein |