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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C006814P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 339aa MW: 39496.1 Da PI: 6.2364 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.6 | 1.6e-55 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeelv++yL+kk+ ++++el +vik+vd+yk+ePwdL+ ++ + +++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ MELO3C006814P1 7 VPPGFRFHPTDEELVDYYLRKKICSRRIEL-DVIKDVDLYKIEPWDLQGicSLGTeDQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAI 100 69****************************.9***************943433332566************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle MELO3C006814P1 101 YS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 **.8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-61 | 5 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.053 | 7 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-28 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MNTFIHVPPG FRFHPTDEEL VDYYLRKKIC SRRIELDVIK DVDLYKIEPW DLQGICSLGT 60 EDQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN ATPQEEGWVV CRVFKKRIAT VRRMNEHESP CWYEEPMSFM 180 PDLDSPNQSS HSNFPHHVSN FPCKKEVEYL PYQQAQVPQD NHNFLHLPLL ESQKLANTFA 240 LDVNLQTPNF QPSAPKQQNI PQQHSDQNLL FLFDNNNNSS DEQTMDELTD WRVFDKYVAS 300 QLSQENVNNN NASKQEVMVP QNAPTSTTST SPIDQLWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-49 | 5 | 157 | 13 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008439092.1 | 0.0 | PREDICTED: NAC domain-containing protein 7-like | ||||
Refseq | XP_008439093.1 | 0.0 | PREDICTED: NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-127 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A1S3AXZ4 | 0.0 | A0A1S3AXZ4_CUCME; NAC domain-containing protein 7-like | ||||
STRING | XP_008439092.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1269 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-116 | NAC 007 |
Publications ? help Back to Top | |||
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