PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C006789P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 511aa MW: 55046.5 Da PI: 8.4576 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.2 | 1.5e-08 | 359 | 406 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq MELO3C006789P1 359 SHSLAERVRREKISKRMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 406 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.29E-10 | 353 | 410 | No hit | No description |
SuperFamily | SSF47459 | 6.8E-17 | 353 | 425 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-16 | 355 | 423 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.326 | 355 | 405 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-5 | 359 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-9 | 361 | 411 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MEKEFFMNDG GCSFYGMEIQ PNELNSSGGL LNPNWENSMD HSDLFESTLS SIVSSPANSH 60 IIGGGGGGGD NLMMRELIGR LGSICNSGEI SPHSYIGGTN NNSTNTSCYN TPLNSPPKLN 120 LSSIMESQIR GNLIPHPQNL APFSTDPGFA ERAARFSCFG NRNLGGLNGQ LGSNETQELS 180 NRSVAGAGVE SGKLSRVSSN KSFNIGGIGS PQMGVQEGDQ SPVQKGNSMP IPNKKVLNRF 240 SRSSTPENAG DSREGSSVSE QIPVGELGLK CKAETNTRKR KSVQTGQAKD AKAAVENQNG 300 KKIKPDEVTK KEIDGAKGKA EAKASGDANQ KQNNDSSKPP EPPKDYIHVR ARRGQATDSH 360 SLAERVRREK ISKRMKFLQD LVPGCNKVTG KAVMLDEIIN YVQSLQRQVE FLSMKLATVN 420 PRMDFNMETL VPKDIFKGPG SSSHTVYPMD SSVPQFAYDY QSMHVPPLHS GIPNGTEKQF 480 ASANDVMQRN LSGQMPNGYN EVVNGIQVNC * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 276 | 281 | TRKRKS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00036 | PBM | Transfer from AT5G48560 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008439060.1 | 0.0 | PREDICTED: transcription factor bHLH62-like | ||||
TrEMBL | A0A1S3AXF6 | 0.0 | A0A1S3AXF6_CUCME; transcription factor bHLH62-like | ||||
STRING | XP_008439060.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 5e-60 | bHLH family protein |