PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MELO3C006453P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 174aa MW: 19239.6 Da PI: 8.8419

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C006453P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	41	63	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H MELO3C006453P1 41 YTCNFCKREFRSAQALGGHMNVH 63 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.25E-7	38	68	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.5E-4	39	65	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.7E-6	41	64	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0045	41	63	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.219	41	68	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	43	63	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MNTSTIGGGA NPSVKSQRNK VCRAATEEDF INGISWPPRS YTCNFCKREF RSAQALGGHM 60 NVHRRDRALL YSPPADGQFT NLNLNLLHNP NPNPNISSYD EVTFVGRKAS DLKLSSMTAE 120 IAAKPNMFER GHWKKGEKFN IGLDIEISTT SSTNVLNDSK MDIDLELRLG YST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	3e-15	36	63	2	29	superman protein
2l1o_A	3e-15	36	63	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008438560.1	1e-128	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	A0A1S3AWP0	1e-127	A0A1S3AWP0_CUCME; transcriptional regulator SUPERMAN-like
STRING	XP_008438560.1	1e-128	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2843	31	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23130.1	6e-23	C2H2 family protein