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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C006366P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 238aa MW: 27960.3 Da PI: 9.2966 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.2 | 1.8e-18 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++v+ +G g+W+++ar g++R +k+c++rw +yl MELO3C006366P1 8 KGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 61 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ MELO3C006366P1 61 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 105 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.083 | 1 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.75E-30 | 7 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-16 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-17 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-24 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.97E-11 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 19.399 | 60 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-14 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 63 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.41E-9 | 65 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MEDEVWRKGP WTAEEDRLLM EYVRIYGEGR WNSVARLAGL KRNGKSCRLR WVNYLRPDLK 60 RGQITPHEES IILELHARWG NRWSTIARSL PGRTDNEIKN YWRTHFKKKV KDSSDANGKA 120 KARLLRRQQF HQQQLQQQQQ QQQQQFNPME MNKIMALLEE QHDDKNNKLE TLSSSSSASE 180 AEKKQNITNF YTQTTDNEQS LISELNNNGF VLPEMLNEGL DVGWAMELGG YPWQWQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-28 | 8 | 110 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008438441.1 | 1e-176 | PREDICTED: transcription factor MYB24-like | ||||
TrEMBL | A0A1S3AW20 | 1e-175 | A0A1S3AW20_CUCME; transcription factor MYB24-like | ||||
STRING | XP_008438441.1 | 1e-175 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 3e-74 | myb domain protein 79 |